YRC Public Data Repository - Protein Structure Prediction

Protein:	LSPA_YERPY
Organism:	Yersinia pseudotuberculosis YPIII
Length:	169 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LSPA_YERPY.

Description	E-value	Query Range	Subject Range
LSPA_YERP3 - Lipoprotein signal peptidase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=lspA ...	1.0E-48	[1..169]	[1..169]
gi\|77976920 - gi\|77976920\|ref\|ZP_00832385.1\| COG0597: Lipoprotein signal peptidase [Yersinia intermedia ATCC 29909...	2.0E-48	[1..169]	[1..169]
gi\|77976150 - gi\|77976150\|ref\|ZP_00831683.1\| COG0597: Lipoprotein signal peptidase [Yersinia frederiksenii ATCC 33...	2.0E-48	[1..169]	[1..169]
gi\|77959745 - gi\|77959745\|ref\|ZP_00823762.1\| COG0597: Lipoprotein signal peptidase [Yersinia bercovieri ATCC 43970...	4.0E-48	[1..169]	[1..169]
LSPA_SHELP - Lipoprotein signal peptidase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=lspA PE=3 SV=1	9.0E-48	[1..166]	[1..166]
gi\|77961932 - gi\|77961932\|ref\|ZP_00825760.1\| COG0597: Lipoprotein signal peptidase [Yersinia mollaretii ATCC 43969...	1.0E-47	[1..169]	[1..169]
gi\|74277650, gi\|... - gi\|75428558\|ref\|ZP_00731760.1\| Signal peptidase II [Actinobacillus succinogenes 130Z], gi\|74277650\|g...	3.0E-47	[6..166]	[29..189]
gi\|114773698 - gi\|114773698\|ref\|ZP_01450729.1\| signal peptidase II [alpha proteobacterium HTCC2255] gi\|221135354 - gi\|221135354\|ref\|ZP_03561657.1\| signal peptidase II [Glaciecola sp. HTCC2999] gi\|114773698, gi... - gi\|114773698\|ref\|ZP_01450729.1\| signal peptidase II [alpha proteobacterium HTCC2255], gi\|114546093\|g...	6.0E-47	[4..165]	[21..182]
LSPA_ENTAE - Lipoprotein signal peptidase OS=Enterobacter aerogenes GN=lspA PE=3 SV=1 LSPA_ENTAK - Lipoprotein signal peptidase OS=Enterobacter aerogenes (strain ATCC 13048 / DSM 30053 / JCM 1235 / K...	9.0E-47	[1..164]	[1..164]
LSPA_SHIFL - Lipoprotein signal peptidase OS=Shigella flexneri GN=lspA PE=3 SV=1 gi\|30061595, gi\|... - gi\|30061595\|ref\|NP_835766.1\| lipoprotein signal peptidase [Shigella flexneri 2a str. 2457T], gi\|3003... gi\|24050222, gi\|... - gi\|24111472\|ref\|NP_705982.1\| lipoprotein signal peptidase [Shigella flexneri 2a str. 301], gi\|240502...	1.0E-46	[1..163]	[1..163]

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Predicted Domain #1

Region A:
Residues: [1-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKPICSTGL RWLWLAVVVV ILDISSKQWV MAHFALYESV PLIPFFNLTY AQNFGAAFSF  60
   61 LADKSGWQRW FFAGIAIGIS VVLMVMMYRS TAKQRLINCA YALIIGGALG NLYDRLVHGA 120
  121 VNDFLDFYIN NWHFPTFNLA DVAICIGAAL VIFEGFLSPV EKNAVNNDE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	73.267606
Match:	PF01252.9
Description:	No description for PF01252.9 was found.

Shown below is our most confident prediction for this domain.
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Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits