YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218695364, gi...
Organism:	Escherichia coli 55989
Length:	374 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218695364, gi....

Description	E-value	Query Range	Subject Range
gi\|82776968, gi\|... - gi\|82776968\|ref\|YP_403317.1\| hypothetical protein SDY_1706 [Shigella dysenteriae Sd197], gi\|81241116...	304.0	[0..1]	[374..1]
gi\|75208734, gi\|... - gi\|75208734\|ref\|ZP_00709026.1\| COG4638: Phenylpropionate dioxygenase and related ring-hydroxylating ...	302.0	[0..1]	[374..1]
gi\|193066364, gi... - gi\|75255571\|ref\|ZP_00727358.1\| COG4638: Phenylpropionate dioxygenase and related ring-hydroxylating ...	302.0	[0..1]	[374..1]
gi\|82543795, gi\|... - gi\|82543795\|ref\|YP_407742.1\| hypothetical protein SBO_1286 [Shigella boydii Sb227], gi\|81245206\|gb\|A... gi\|187428150, gi... - gi\|75177269\|ref\|ZP_00697358.1\| COG4638: Phenylpropionate dioxygenase and related ring-hydroxylating ...	301.0	[0..1]	[374..1]
gi\|77633302 - gi\|77633302\|ref\|ZP_00795440.1\| COG4638: Phenylpropionate dioxygenase and related ring-hydroxylating ... gi\|89102203 - gi\|89102203\|ref\|ZP_01174855.1\| COG4638: Phenylpropionate dioxygenase and related ring-hydroxylating ... gi\|45442098, gi\|... - gi\|45442098\|ref\|NP_993637.1\| putative dioxygenase alpha subunit [Yersinia pestis biovar Microtus str...	287.0	[0..1]	[374..29]
gi\|108807984, gi... - gi\|108807984\|ref\|YP_651900.1\| putative dioxygenase alpha subunit [Yersinia pestis Antiqua], gi\|10877... gi\|51596849, gi\|... - gi\|51596849\|ref\|YP_071040.1\| putative dioxygenase alpha subunit [Yersinia pseudotuberculosis IP 3295... gi\|25510784 - pir\|\|AF0304 probable dioxygenase alpha chain YPO2493 [imported] - Yersinia pestis (strain CO92) gi\|16122714, gi\|... - gi\|218929582\|ref\|YP_002347457.1\| putative dioxygenase alpha subunit [Yersinia pestis CO92], gi\|16122... gi\|167466417 - gi\|167466417\|ref\|ZP_02331121.1\| putative dioxygenase alpha subunit [Yersinia pestis FV-1] gi\|167051235, gi... - gi\|167398731\|ref\|ZP_02304255.1\| rieske 2Fe-2S domain protein [Yersinia pestis biovar Antiqua str. UG... gi\|186895929, gi... - gi\|186895929\|ref\|YP_001873041.1\| Rieske (2Fe-2S) domain-containing protein [Yersinia pseudotuberculo... gi\|153949705, gi... - gi\|77629584\|ref\|ZP_00792170.1\| COG4638: Phenylpropionate dioxygenase and related ring-hydroxylating ... gi\|169750394, gi... - gi\|170023860\|ref\|YP_001720365.1\| Rieske (2Fe-2S) domain-containing protein [Yersinia pseudotuberculo... gi\|229838025, gi... - gi\|229838025\|ref\|ZP_04458184.1\| putative dioxygenase alpha subunit [Yersinia pestis biovar Orientali... gi\|229895222, gi... - gi\|229895222\|ref\|ZP_04510396.1\| putative dioxygenase alpha subunit [Yersinia pestis Pestoides A], gi... gi\|229688134, gi... - gi\|229898586\|ref\|ZP_04513731.1\| putative dioxygenase alpha subunit [Yersinia pestis biovar Orientali... gi\|149292011, gi... - gi\|149365598\|ref\|ZP_01887633.1\| putative dioxygenase alpha subunit [Yersinia pestis CA88-4125], gi\|1... Q669F7\|Q669F7_YERPS - Putative dioxygenase alpha subunit - Yersinia pseudotuberculosis gi\|145599187, gi... - gi\|145599187\|ref\|YP_001163263.1\| dioxygenase alpha subunit [Yersinia pestis Pestoides F], gi\|1452108... gi\|162420801, gi... - gi\|162420801\|ref\|YP_001606242.1\| Rieske (2Fe-2S) domain-containing protein [Yersinia pestis Angola],... gi\|166008080, gi... - gi\|166008080\|ref\|ZP_02228978.1\| rieske 2Fe-2S domain protein [Yersinia pestis biovar Antiqua str. E1... gi\|165925516, gi... - gi\|165925516\|ref\|ZP_02221348.1\| rieske 2Fe-2S domain protein [Yersinia pestis biovar Orientalis str....	283.0	[0..1]	[374..1]
gi\|104781263, gi... - gi\|95110250\|emb\|CAK14957.1\| putative dioxygenase, alpha subunit [Pseudomonas entomophila L48], gi\|10... gi\|95110250 - gi\|95110250\|emb\|CAK14957.1\| putative dioxygenase, alpha subunit [Pseudomonas entomophila L48]	274.0	[0..4]	[369..1]
gi\|116696065, gi... - gi\|116696065\|ref\|YP_841641.1\| phenylpropionate dioxygenase or related ring-hydroxylating dioxygenase...	261.0	[0..18]	[373..13]
gi\|45516194, gi\|... - gi\|73539656\|ref\|YP_300023.1\| Rieske (2Fe-2S) region [Ralstonia eutropha JMP134], gi\|72122993\|gb\|AAZ6...	258.0	[0..8]	[373..3]
gi\|77965365, gi\|... - gi\|78060815\|ref\|YP_367390.1\| putative dioxygenase [Burkholderia sp. 383], gi\|77965365\|gb\|ABB06746.1\|...	247.0	[0..17]	[374..21]

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Predicted Domain #1

Region A:
Residues: [1-374]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNLSPDFVL PENFCANPQE AWTIPARFYT DQNAFEHEKE NVFAKSWICV AHSSELANAN  60
   61 DYVTREIIGE SIVLVRGRDK VLRAFYNVCP HRGHQLLSGE GKAKNVITCP YHAWAFKLDG 120
  121 NLAHARNCEN VANFDSDKAQ LVPVRLEEYA GFVFINMDPN ATSVEDQLPG LGAKVLEACP 180
  181 EVHDLKLAAR FTTRTPANWK NIVDNYLECY HCGPAHPGFS DSVQVDRYWH TMHGNWTLQY 240
  241 GFAKPSEQSF KFEEGTDAAF HGFWLWPCTM LNVTPIKGMM TVIYEFPVDS ETTLQNYDIY 300
  301 FTNEELTDEQ KSLIEWYRDV FRPEDLRLVE SVQKGLKSRG YRGQGRIMAD SSGSGISEHG 360
  361 IAHFHNLLAQ VFKD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.0
Match:	1uliA
Description:	Biphenyl dioxygenase (BphA1A2) derived from Rhodococcus sp. strain RHA1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits