YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33357731
Organism:	Homo sapiens
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33357731.

Description	E-value	Query Range	Subject Range
gi\|12841781 - gi\|12841781\|dbj\|BAB25349.1\| unnamed protein product [Mus musculus]	187.0	[0..2]	[208..20]
gi\|62078619, gi\|... - gi\|62078619\|ref\|NP_001013967.1\| Immunoglobulin heavy chain (gamma polypeptide) [Rattus norvegicus], ...	184.0	[0..2]	[209..20]
gi\|184848 - gi\|184848\|gb\|AAA73002.1\| [Human Ig rearranged gamma chain mRNA, V-J-C region and complete cds.], gen...	184.0	[0..3]	[208..136]
gi\|164507 - gi\|164507\|gb\|AAA51295.1\| immunoglobulin gamma-chain	183.0	[0..5]	[209..23]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLLEQSPQF LSIQEGENLT VYCNSSSVFS SLQWYRQEPG EGPVLLVTVV TGGEVKKLKR  60
   61 LTFQFGDARK DSSLHITAAQ PGDTGLYLCA GAGSQGNLIF GKGTKLSVKP NIQNPDPAVY 120
  121 QLRDSKSSDK SVCLFTDFDS QTNVSQSKDS DVYITDKTVL DMRSMDFKSN SAVAWSNKSD 180
  181 FACANAFNNS IIPEDTFFPS PENDGGGCKH HHHHH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.154902
Match:	1ogaD
Description:	T-cell antigen receptor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.483195558859675	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: