YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|165927985, gi...
Organism:	Yersinia pestis biovar Orientalis str. F1991016
Length:	76 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|165927985, gi....

Description	E-value	Query Range	Subject Range
gi\|26248106, gi\|... - gi\|26248106\|ref\|NP_754146.1\| DNA polymerase III, theta subunit [Escherichia coli CFT073], gi\|2610850... gi\|24052188, gi\|... - ref\|NP_707705.1\| DNA polymerase III theta subunit [Shigella flexneri 2a str. 301], gb\|AAN43412.1\| D... gi\|237705794, gi... - gi\|237705794\|ref\|ZP_04536275.1\| DNA polymerase III theta subunit [Escherichia sp. 3_2_53FAA], gi\|226... gi\|110343552, gi... - gi\|110641960\|ref\|YP_669690.1\| DNA polymerase III subunit theta [Escherichia coli 536], gi\|110343552\|... gi\|91211065, gi\|... - gi\|91211065\|ref\|YP_541051.1\| DNA polymerase III theta subunit [Escherichia coli UTI89], gi\|91072639\|...	3.0E-28	[1..76]	[30..105]
gi\|36786013, gi\|... - gi\|37526581\|ref\|NP_929925.1\| DNA polymerase III subunit theta [Photorhabdus luminescens subsp. laumo...	4.0E-28	[1..76]	[1..76]
gi\|217318086, gi... - gi\|217328739\|ref\|ZP_03444820.1\| DNA polymerase III, theta subunit [Escherichia coli O157:H7 str. TW1... gi\|215265127, gi... - gi\|215487055\|ref\|YP_002329486.1\| DNA polymerase III subunit theta [Escherichia coli O127:H6 str. E23... gi\|218558706, gi... - gi\|218558706\|ref\|YP_002391619.1\| DNA polymerase III subunit theta [Escherichia coli S88], gi\|2183654... gi\|218554416, gi... - gi\|218554416\|ref\|YP_002387329.1\| DNA polymerase III subunit theta [Escherichia coli IAI1], gi\|218361... gi\|218695408, gi... - gi\|218695408\|ref\|YP_002403075.1\| DNA polymerase III subunit theta [Escherichia coli 55989], gi\|21835... gi\|218689780, gi... - gi\|218689780\|ref\|YP_002397992.1\| DNA polymerase III subunit theta [Escherichia coli ED1a], gi\|218427... gi\|218432438, gi... - gi\|218705341\|ref\|YP_002412860.1\| DNA polymerase III subunit theta [Escherichia coli UMN026], gi\|2184... gi\|218369573, gi... - gi\|218699587\|ref\|YP_002407216.1\| DNA polymerase III subunit theta [Escherichia coli IAI39], gi\|21836... gi\|75511812, gi\|... - gi\|75511812\|ref\|ZP_00734430.1\| hypothetical protein Ecol5_01003928 [Escherichia coli 53638], gi\|1884... gi\|74311835, gi\|... - gi\|74311835\|ref\|YP_310254.1\| DNA polymerase III subunit theta [Shigella sonnei Ss046], gi\|73855312\|g... gi\|75239737, gi\|... - gi\|75239737\|ref\|ZP_00723700.1\| hypothetical protein EcolF_01002934 [Escherichia coli F11], gi\|191173... gi\|193066074, gi... - gi\|75255857\|ref\|ZP_00727596.1\| hypothetical protein EcolE2_01004125 [Escherichia coli E22], gi\|19306... gi\|81240575, gi\|... - gi\|82776427\|ref\|YP_402776.1\| DNA polymerase III subunit theta [Shigella dysenteriae Sd197], gi\|81240... gi\|56383524, gi\|... - gi\|56479973\|ref\|NP_707705.2\| DNA polymerase III subunit theta [Shigella flexneri 2a str. 301], gi\|56... gi\|194439023, gi... - gi\|83585557\|ref\|ZP_00924201.1\| hypothetical protein Ecol1_01003287 [Escherichia coli 101-1], gi\|1944... gi\|75190871, gi\|... - gi\|75190871\|ref\|ZP_00704138.1\| hypothetical protein EcolE_01004184 [Escherichia coli E24377A], gi\|15... gi\|75228304, gi\|... - gi\|75228304\|ref\|ZP_00714956.1\| hypothetical protein EcolB7_01003381 [Escherichia coli B7A], gi\|19116... gi\|192956804, gi... - gi\|75235354\|ref\|ZP_00719580.1\| hypothetical protein EcolE1_01002906 [Escherichia coli E110019], gi\|1... gi\|157066989, gi... - gi\|75195907\|ref\|ZP_00705977.1\| hypothetical protein EcolH_01001711 [Escherichia coli HS], gi\|1571613... gi\|194412293, gi... - gi\|75209112\|ref\|ZP_00709367.1\| hypothetical protein EcolB_01003717 [Escherichia coli B171], gi\|19442... HOLE_ECOL6 - DNA polymerase III subunit theta OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=h... EG11505 - DNA polymerase III, theta subunit / DNA polymerase III, theta subunit gi\|168752093, gi... - gi\|188013967\|gb\|EDU52089.1\| DNA polymerase III, theta subunit [Escherichia coli O157:H7 str. EC4113]... gi\|162138428 - gi\|162138428\|ref\|YP_541051.2\| DNA polymerase III subunit theta [Escherichia coli UTI89] gi\|238860836, gi... - gi\|238901057\|ref\|YP_002926853.1\| DNA polymerase III, theta subunit [Escherichia coli BW2952], gi\|238... gi\|242377563, gi... - gi\|251785290\|ref\|YP_002999594.1\| hypothetical protein B21_01801 [Escherichia coli BL21], gi\|24237756... gi\|253773203, gi... - gi\|254288690\|ref\|YP_003054438.1\| DNA polymerase III, theta subunit [Escherichia coli BL21(DE3)], gi\|... gi\|254161902, gi... - gi\|254161902\|ref\|YP_003045010.1\| DNA polymerase III, theta subunit [Escherichia coli B str. REL606],... gi\|170680257, gi... - gi\|170680257\|ref\|YP_001743403.1\| DNA polymerase III, theta subunit [Escherichia coli SMS-3-5], gi\|17... gi\|254592866, gi... - gi\|254793466\|ref\|YP_003078303.1\| DNA polymerase III, theta subunit [Escherichia coli O157:H7 str. TW... gi\|169889333, gi... - gi\|170081498\|ref\|YP_001730818.1\| DNA polymerase III, theta subunit [Escherichia coli str. K-12 subst... gi\|208810613, gi... - gi\|208810613\|ref\|ZP_03252489.1\| DNA polymerase III, theta subunit [Escherichia coli O157:H7 str. EC4... gi\|195939743 - gi\|195939743\|ref\|ZP_03085125.1\| DNA polymerase III subunit theta [Escherichia coli O157:H7 str. EC40... gi\|208739600, gi... - gi\|208819477\|ref\|ZP_03259797.1\| DNA polymerase III, theta subunit [Escherichia coli O157:H7 str. EC4... gi\|208816530, gi... - gi\|208816530\|ref\|ZP_03257650.1\| DNA polymerase III, theta subunit [Escherichia coli O157:H7 str. EC4... gi\|209912467, gi... - gi\|209919208\|ref\|YP_002293292.1\| DNA polymerase III subunit theta [Escherichia coli SE11], gi\|209912... gi\|209162110, gi... - gi\|209400710\|ref\|YP_002270924.1\| DNA polymerase III, theta subunit [Escherichia coli O157:H7 str. EC... gi\|168762365, gi... - gi\|189367323\|gb\|EDU85739.1\| DNA polymerase III, theta subunit [Escherichia coli O157:H7 str. EC4501]... gi\|89108682, gi\|... - gi\|89108682\|ref\|AP_002462.1\| DNA polymerase III, theta subunit [Escherichia coli str. K-12 substr. W... gi\|168758578, gi... - gi\|189354612\|gb\|EDU73031.1\| DNA polymerase III, theta subunit [Escherichia coli O157:H7 str. EC4401]... gi\|13362020, gi\|... - gi\|15831806\|ref\|NP_310579.1\| DNA polymerase III subunit theta [Escherichia coli O157:H7 str. Sakai],... gi\|187767060, gi... - gi\|187767060\|gb\|EDU30904.1\| DNA polymerase III, theta subunit [Escherichia coli O157:H7 str. EC4196]... gi\|189360267, gi... - gi\|189360267\|gb\|EDU78686.1\| DNA polymerase III, theta subunit [Escherichia coli O157:H7 str. EC4486]... gi\|168788261, gi... - gi\|189371932\|gb\|EDU90348.1\| DNA polymerase III, theta subunit [Escherichia coli O157:H7 str. EC869],... gi\|188999477, gi... - gi\|188999477\|gb\|EDU68463.1\| DNA polymerase III, theta subunit [Escherichia coli O157:H7 str. EC4076]... gi\|170019813, gi... - gi\|170019813\|ref\|YP_001724767.1\| DNA polymerase III subunit theta [Escherichia coli ATCC 8739], gi\|1... gi\|168802380, gi... - gi\|189375615\|gb\|EDU94031.1\| DNA polymerase III, theta subunit [Escherichia coli O157:H7 str. EC508],... HOLE_ECOLI - DNA polymerase III theta subunit (EC 2.7.7.7) - Escherichia coli HOLE_SHIFL - DNA polymerase III subunit theta OS=Shigella flexneri GN=holE PE=3 SV=1 gi\|124530964, gi... - gi\|124530964\|ref\|ZP_01701420.1\| DNA polymerase II, beta subunit [Escherichia coli B], gi\|124498859\|g... gi\|30063254, gi\|... - gi\|30063254\|ref\|NP_837425.1\| DNA polymerase III subunit theta [Shigella flexneri 2a str. 2457T], gi\|... HOLE_ECO57 - DNA polymerase III subunit theta OS=Escherichia coli O157:H7 GN=holE PE=3 SV=1 EG11505 - DNA polymerase III, theta subunit / DNA polymerase III, theta subunit gi\|12515892, gi\|... - gi\|15802255\|ref\|NP_288279.1\| DNA polymerase III subunit theta [Escherichia coli O157:H7 EDL933], gi\|... HOLE_ECOL6 - DNA polymerase III subunit theta OS=Escherichia coli O6 GN=holE PE=3 SV=1	2.0E-27	[1..76]	[1..76]
gi\|8569331 - gi\|8569331\|pdb\|1DU2\|A Chain A, Solution Structure Of The Theta Subunit Of Dna Polymerase Iii	2.0E-27	[4..76]	[4..76]
gi\|168241500, gi... - gi\|205339195\|gb\|EDZ25959.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar He... gi\|205350631, gi... - gi\|205350631\|gb\|EDZ37262.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ha... gi\|195634370, gi... - gi\|195634370\|gb\|EDX52722.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ne... lcl\|NC_016856.1_... - [gene=holE] [protein=DNA polymerase III subunit theta] [protein_id=YP_005237835.1] [location=1981459... gi\|168820694, gi... - gi\|205342761\|gb\|EDZ29525.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar We... gi\|167552494, gi... - gi\|205322925\|gb\|EDZ10764.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Sa... gi\|167993851, gi... - gi\|205328225\|gb\|EDZ14989.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar 4,... gi\|205332299, gi... - gi\|205332299\|gb\|EDZ19063.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ke... gi\|168238502, gi... - gi\|197288696\|gb\|EDY28071.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Sc... gi\|161613573, gi... - gi\|161613573\|ref\|YP_001587538.1\| DNA polymerase III subunit theta [Salmonella enterica subsp. enteri... gi\|29141482, gi\|... - gi\|29141482\|ref\|NP_804824.1\| DNA polymerase III subunit theta [Salmonella enterica subsp. enterica s... gi\|16760827 - gi\|16760827\|ref\|NP_456444.1\| DNA polymerase III subunit theta [Salmonella enterica subsp. enterica s... gi\|25517052, gi\|... - gi\|25517052\|pir\|\|AH0740 DNA-directed DNA polymerase (EC 2.7.7.7) - Salmonella enterica subsp. enteri... gi\|16420411, gi\|... - gi\|16765218\|ref\|NP_460833.1\| DNA polymerase III subunit theta [Salmonella typhimurium LT2], gi\|16420... gi\|213585114 - gi\|213585114\|ref\|ZP_03366940.1\| DNA polymerase III subunit theta [Salmonella enterica subsp. enteric... gi\|213648157 - gi\|213648157\|ref\|ZP_03378210.1\| DNA polymerase III subunit theta [Salmonella enterica subsp. enteric... gi\|213851905 - gi\|213851905\|ref\|ZP_03381437.1\| DNA polymerase III subunit theta [Salmonella enterica subsp. enteric... gi\|213981546 - gi\|213981546\|ref\|ZP_03408805.1\| DNA polymerase III subunit theta [Salmonella enterica subsp. enteric... gi\|205352418, gi... - gi\|205352418\|ref\|YP_002226219.1\| DNA polymerase III subunit theta [Salmonella enterica subsp. enteri... gi\|206708406, gi... - gi\|207856603\|ref\|YP_002243254.1\| DNA polymerase III subunit theta [Salmonella enterica subsp. enteri... gi\|213163498 - gi\|213163498\|ref\|ZP_03349208.1\| DNA polymerase III subunit theta [Salmonella enterica subsp. enteric... gi\|213426808 - gi\|213426808\|ref\|ZP_03359558.1\| DNA polymerase III subunit theta [Salmonella enterica subsp. enteric... gi\|197264423, gi... - gi\|197264423\|ref\|ZP_03164497.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|197362130, gi... - gi\|197362130\|ref\|YP_002141767.1\| DNA polymerase III subunit theta [Salmonella enterica subsp. enteri... gi\|198243422, gi... - gi\|198243422\|ref\|YP_002215211.1\| hypothetical protein SeD_A1373 [Salmonella enterica subsp. enterica... gi\|199603121, gi... - gi\|200390676\|ref\|ZP_03217287.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|194402350, gi... - gi\|194443687\|ref\|YP_002041141.1\| hypothetical protein SNSL254_A2035 [Salmonella enterica subsp. ente... gi\|194451599, gi... - gi\|194451599\|ref\|YP_002045929.1\| DNA polymerase III subunit theta [Salmonella enterica subsp. enteri... gi\|194459018, gi... - gi\|194472654\|ref\|ZP_03078638.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|194710011, gi... - gi\|194734509\|ref\|YP_002114911.1\| hypothetical protein SeSA_A2030 [Salmonella enterica subsp. enteric... gi\|238912065 - gi\|238912065\|ref\|ZP_04655902.1\| DNA polymerase III subunit theta [Salmonella enterica subsp. enteric... gi\|214002648 - gi\|214002648\|ref\|ZP_03413383.1\| DNA polymerase III subunit theta [Salmonella enterica subsp. enteric... gi\|224583621, gi... - gi\|224583621\|ref\|YP_002637419.1\| DNA polymerase III, theta subunit [Salmonella enterica subsp. enter... gi\|62128084, gi\|... - gi\|62180451\|ref\|YP_216868.1\| DNA polymerase III subunit theta [Salmonella enterica subsp. enterica s... gi\|56413204, gi\|... - gi\|56413204\|ref\|YP_150279.1\| DNA polymerase III subunit theta [Salmonella enterica subsp. enterica s...	2.0E-27	[1..76]	[1..76]
gi\|75175679, gi\|... - gi\|75175679\|ref\|ZP_00695885.1\| hypothetical protein SboyB_01004275 [Shigella boydii BS512], gi\|18773... gi\|81245074, gi\|... - gi\|82543663\|ref\|YP_407610.1\| DNA polymerase III subunit theta [Shigella boydii Sb227], gi\|81245074\|g...	4.0E-27	[1..76]	[1..76]
gi\|110615335, gi... - gi\|110805787\|ref\|YP_689307.1\| DNA polymerase III subunit theta [Shigella flexneri 5 str. 8401], gi\|1...	4.0E-27	[1..76]	[1..76]
gi\|50121400, gi\|... - gi\|50121400\|ref\|YP_050567.1\| DNA polymerase III subunit theta [Pectobacterium atrosepticum SCRI1043]...	3.0E-26	[1..76]	[1..76]
lcl\|NC_016855.1_... - [gene=STM14_5586] [protein=putative inner membrane protein] [protein_id=YP_005235592.1] [location=53... gi\|68166365, gi\|... - gi\|71559066\|ref\|YP_271793.1\| DNA polymerase III subunit theta [Salmonella enterica], gi\|68166365\|gb\|... gi\|17233434, gi\|... - gi\|17233434\|ref\|NP_490553.1\| putative inner membrane protein [Salmonella typhimurium LT2], gi\|164452... gi\|205327388, gi... - gi\|205327388\|gb\|EDZ14152.1\| putative inner membrane protein [Salmonella enterica subsp. enterica ser...	2.0E-25	[2..76]	[3..77]
gi\|238789014, gi... - gi\|77972298\|ref\|ZP_00827868.1\| hypothetical protein YfreA_01003904 [Yersinia frederiksenii ATCC 3364...	2.0E-25	[1..76]	[1..76]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYNLVELSD EETAKMNVDL AASGVAFKER YNMPVIPEMV AREQPEALRE YFLQRLAHYR  60
   61 IESKKLSRLP YEPKVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.045757
Match:	1du2A
Description:	Theta subunit of DNA polymerase III
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits