YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|37927701, gi\|...
Organism:	Escherichia coli
Length:	99 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|37927701, gi|....

Description	E-value	Query Range	Subject Range
gi\|75236337, gi\|... - gi\|75236337\|ref\|ZP_00720444.1\| COG0789: Predicted transcriptional regulators [Escherichia coli F11],... gi\|91074293, gi\|... - gi\|91212719\|ref\|YP_542705.1\| zinc-responsive transcriptional regulator [Escherichia coli UTI89], gi\|... gi\|117625574, gi... - gi\|117625574\|ref\|YP_858897.1\| zinc-responsive transcriptional regulator [Escherichia coli APEC O1], ... gi\|110345123, gi... - gi\|110643531\|ref\|YP_671261.1\| zinc-responsive transcriptional regulator [Escherichia coli 536], gi\|1... gi\|227883424, gi... - gi\|227883424\|ref\|ZP_04001229.1\| zinc-responsive transcriptional regulator [Escherichia coli 83972], ... gi\|237703022, gi... - gi\|237703022\|ref\|ZP_04533503.1\| zinc-responsive transcriptional regulator [Escherichia sp. 3_2_53FAA... gi\|26249877, gi\|... - gi\|26249877\|ref\|NP_755917.1\| zinc-responsive transcriptional regulator [Escherichia coli CFT073], gi... gi\|218367123, gi... - gi\|218560354\|ref\|YP_002393267.1\| zinc-responsive transcriptional regulator [Escherichia coli S88], g...	108.0	[0..1]	[99..43]
gi\|124532216, gi... - gi\|124532216\|ref\|ZP_01702154.1\| transcriptional regulator, MerR family [Escherichia coli B], gi\|1244... gi\|168769154, gi... - gi\|189361727\|gb\|EDU80146.1\| Zn(II)-responsive transcriptional regulator [Escherichia coli O157:H7 st... gi\|187767003, gi... - gi\|187767003\|gb\|EDU30847.1\| Zn(II)-responsive transcriptional regulator [Escherichia coli O157:H7 st... ZNTR_ECOLI - HTH-type transcriptional regulator zntR (Zn(II)-responsive regulator of zntA) - Escherichia coli gi\|168783859, gi... - gi\|188998889\|gb\|EDU67875.1\| Zn(II)-responsive transcriptional regulator [Escherichia coli O157:H7 st... gi\|189374221, gi... - gi\|189374221\|gb\|EDU92637.1\| Zn(II)-responsive transcriptional regulator [Escherichia coli O157:H7 st... gi\|189375357, gi... - gi\|189375357\|gb\|EDU93773.1\| Zn(II)-responsive transcriptional regulator [Escherichia coli O157:H7 st... gi\|169753400, gi... - gi\|170018472\|ref\|YP_001723426.1\| zinc-responsive transcriptional regulator [Escherichia coli ATCC 87... gi\|169890647, gi... - gi\|170082812\|ref\|YP_001732132.1\| DNA-binding transcriptional activator in response to Zn(II) [Escher... gi\|170518550, gi... - gi\|170680832\|ref\|YP_001745554.1\| Zn(II)-responsive transcriptional regulator [Escherichia coli SMS-3... gi\|188013869, gi... - gi\|188013869\|gb\|EDU51991.1\| Zn(II)-responsive transcriptional regulator [Escherichia coli O157:H7 st... gi\|189354672, gi... - gi\|189354672\|gb\|EDU73091.1\| Zn(II)-responsive transcriptional regulator [Escherichia coli O157:H7 st... gi\|168764975, gi... - gi\|189365120\|gb\|EDU83536.1\| Zn(II)-responsive transcriptional regulator [Escherichia coli O157:H7 st... gi\|238902383, gi... - gi\|238902383\|ref\|YP_002928179.1\| DNA-binding transcriptional activator in response to Zn(II) [Escher... gi\|218550568, gi... - gi\|218550568\|ref\|YP_002384359.1\| zinc-responsive transcriptional regulator [Escherichia fergusonii A... gi\|242378819, gi... - gi\|251786546\|ref\|YP_003000850.1\| hypothetical protein B21_03094 [Escherichia coli BL21], gi\|24237881... gi\|218362618, gi... - gi\|218555850\|ref\|YP_002388763.1\| zinc-responsive transcriptional regulator [Escherichia coli IAI1], ... gi\|253322928, gi... - gi\|254289970\|ref\|YP_003055718.1\| zinc-responsive transcriptional regulator [Escherichia coli BL21(DE... gi\|218696985, gi... - gi\|218696985\|ref\|YP_002404652.1\| zinc-responsive transcriptional regulator [Escherichia coli 55989],... gi\|226838959, gi... - gi\|254038453\|ref\|ZP_04872509.1\| Zn(II)-responsive transcriptional regulator [Escherichia sp. 1_1_43]... ZNTR_ECO57 - HTH-type transcriptional regulator ZntR OS=Escherichia coli O157:H7 GN=zntR PE=3 SV=1 gi\|218702055, gi... - gi\|218702055\|ref\|YP_002409684.1\| zinc-responsive transcriptional regulator [Escherichia coli IAI39],... gi\|254163220, gi... - gi\|254163220\|ref\|YP_003046328.1\| zinc-responsive transcriptional regulator [Escherichia coli B str. ... EG11969 - zntA gene transcriptional activator / Zn-responsive activator of zntA transcription gi\|218433997, gi... - gi\|218706900\|ref\|YP_002414419.1\| zinc-responsive transcriptional regulator [Escherichia coli UMN026]... gi\|254594629, gi... - gi\|254795229\|ref\|YP_003080066.1\| DNA-binding transcriptional activator in response to Zn(II) [Escher... gi\|194435075, gi... - gi\|194435075\|ref\|ZP_03067313.1\| Zn(II)-responsive transcriptional regulator [Shigella dysenteriae 10... gi\|195939840 - gi\|195939840\|ref\|ZP_03085222.1\| zinc-responsive transcriptional regulator [Escherichia coli O157:H7 ... gi\|208728113, gi... - gi\|208808312\|ref\|ZP_03250649.1\| Zn(II)-responsive transcriptional regulator [Escherichia coli O157:H... gi\|208813341, gi... - gi\|208813341\|ref\|ZP_03254670.1\| Zn(II)-responsive transcriptional regulator [Escherichia coli O157:H... gi\|208741589, gi... - gi\|208821466\|ref\|ZP_03261786.1\| Zn(II)-responsive transcriptional regulator [Escherichia coli O157:H... gi\|209161738, gi... - gi\|209400338\|ref\|YP_002272748.1\| Zn(II)-responsive transcriptional regulator [Escherichia coli O157:... gi\|209914017, gi... - gi\|209920758\|ref\|YP_002294842.1\| zinc-responsive transcriptional regulator [Escherichia coli SE11], ... gi\|217320363, gi... - gi\|217324142\|ref\|ZP_03440226.1\| Zn(II)-responsive transcriptional regulator [Escherichia coli O157:H... gi\|13363630, gi\|... - gi\|15833411\|ref\|NP_312184.1\| zinc-responsive transcriptional regulator [Escherichia coli O157:H7 str... gi\|85676749, gi\|... - gi\|89110718\|ref\|AP_004498.1\| DNA-binding transcriptional activator [Escherichia coli str. K-12 subst... gi\|82778588, gi\|... - gi\|82778588\|ref\|YP_404937.1\| zinc-responsive transcriptional regulator [Shigella dysenteriae Sd197],... gi\|81247066, gi\|... - gi\|82545655\|ref\|YP_409602.1\| zinc-responsive transcriptional regulator [Shigella boydii Sb227], gi\|8... gi\|75208442, gi\|... - gi\|75208442\|ref\|ZP_00708771.1\| COG0789: Predicted transcriptional regulators [Escherichia coli B171]... gi\|193071542, gi... - gi\|75214903\|ref\|ZP_00713382.1\| COG0789: Predicted transcriptional regulators [Escherichia coli E1100... gi\|75188083, gi\|... - gi\|75188083\|ref\|ZP_00701350.1\| COG0789: Predicted transcriptional regulators [Escherichia coli E2437... gi\|157162766, gi... - gi\|75197227\|ref\|ZP_00707297.1\| COG0789: Predicted transcriptional regulators [Escherichia coli HS], ... gi\|75511171, gi\|... - gi\|75511171\|ref\|ZP_00733883.1\| COG0789: Predicted transcriptional regulators [Escherichia coli 53638... gi\|74313811, gi\|... - gi\|74313811\|ref\|YP_312230.1\| zinc-responsive transcriptional regulator [Shigella sonnei Ss046], gi\|7... gi\|75227389, gi\|... - gi\|75227389\|ref\|ZP_00714165.1\| COG0789: Predicted transcriptional regulators [Escherichia coli B7A],... gi\|192925875, gi... - gi\|75255410\|ref\|ZP_00727222.1\| COG0789: Predicted transcriptional regulators [Escherichia coli E22],... gi\|194440018, gi... - gi\|83584650\|ref\|ZP_00923317.1\| COG0789: Predicted transcriptional regulators [Escherichia coli 101-1... gi\|75176296, gi\|... - gi\|75176296\|ref\|ZP_00696448.1\| COG0789: Predicted transcriptional regulators [Shigella boydii BS512]... EG11969 - zntA gene transcriptional activator / Zn-responsive activator of zntA transcription	108.0	[0..1]	[99..43]
gi\|16766701, gi\|... - gi\|16766701\|ref\|NP_462316.1\| zinc-responsive transcriptional regulator [Salmonella typhimurium LT2],... lcl\|NC_016856.1_... - [gene=zntR] [protein=zinc-responsive transcriptional regulator] [protein_id=YP_005239602.1] [locatio... gi\|200387120, gi... - gi\|200387120\|ref\|ZP_03213732.1\| Zn(II)-responsive transcriptional regulator [Salmonella enterica sub... gi\|204319837, gi... - gi\|204931409\|ref\|ZP_03222078.1\| Zn(II)-responsive transcriptional regulator [Salmonella enterica sub... gi\|197364261, gi... - gi\|197364261\|ref\|YP_002143898.1\| zinc-responsive transcriptional regulator [Salmonella enterica subs... gi\|198242753, gi... - gi\|198242753\|ref\|YP_002217375.1\| Zn(II)-responsive transcriptional regulator [Salmonella enterica su... gi\|56129588, gi\|... - gi\|56415331\|ref\|YP_152406.1\| zinc-responsive transcriptional regulator [Salmonella enterica subsp. e... gi\|194734612, gi... - gi\|194734612\|ref\|YP_002116355.1\| Zn(II)-responsive transcriptional regulator [Salmonella enterica su... gi\|197243718, gi... - gi\|197265463\|ref\|ZP_03165537.1\| Zn(II)-responsive transcriptional regulator [Salmonella enterica sub... gi\|194406850, gi... - gi\|194448546\|ref\|YP_002047436.1\| zinc-responsive transcriptional regulator [Salmonella enterica subs... gi\|194469471, gi... - gi\|194469471\|ref\|ZP_03075455.1\| Zn(II)-responsive transcriptional regulator [Salmonella enterica sub... gi\|168264707, gi... - gi\|205346872\|gb\|EDZ33503.1\| Zn(II)-responsive transcriptional regulator [Salmonella enterica subsp. ... gi\|195628893, gi... - gi\|195628893\|gb\|EDX48303.1\| Zn(II)-responsive transcriptional regulator [Salmonella enterica subsp. ... gi\|168239755, gi... - gi\|197287581\|gb\|EDY26973.1\| Zn(II)-responsive transcriptional regulator [Salmonella enterica subsp. ... gi\|205336012, gi... - gi\|205336012\|gb\|EDZ22776.1\| Zn(II)-responsive transcriptional regulator [Salmonella enterica subsp. ... gi\|205327097, gi... - gi\|205327097\|gb\|EDZ13861.1\| Zn(II)-responsive transcriptional regulator [Salmonella enterica subsp. ... gi\|205331612, gi... - gi\|205331612\|gb\|EDZ18376.1\| Zn(II)-responsive transcriptional regulator [Salmonella enterica subsp. ... gi\|161365801, gi... - gi\|161616437\|ref\|YP_001590402.1\| zinc-responsive transcriptional regulator [Salmonella enterica subs... gi\|205321452, gi... - gi\|205321452\|gb\|EDZ09291.1\| Zn(II)-responsive transcriptional regulator [Salmonella enterica subsp. ...	108.0	[0..1]	[99..43]
gi\|224585207, gi... - gi\|224585207\|ref\|YP_002639006.1\| zinc-responsive transcriptional regulator [Salmonella enterica subs... gi\|197213539, gi... - gi\|197249836\|ref\|YP_002148332.1\| Zn(II)-responsive transcriptional regulator [Salmonella enterica su... gi\|194401810, gi... - gi\|194443147\|ref\|YP_002042663.1\| Zn(II)-responsive transcriptional regulator [Salmonella enterica su... gi\|205340487, gi... - gi\|205340487\|gb\|EDZ27251.1\| Zn(II)-responsive transcriptional regulator [Salmonella enterica subsp. ... gi\|238913873 - gi\|238913873\|ref\|ZP_04657710.1\| zinc-responsive transcriptional regulator [Salmonella enterica subsp... gi\|62181917, gi\|... - gi\|62181917\|ref\|YP_218334.1\| zinc-responsive transcriptional regulator [Salmonella enterica subsp. e...	107.0	[0..1]	[99..43]
gi\|15803819, gi\|... - gi\|15803819\|ref\|NP_289853.1\| zinc-responsive transcriptional regulator [Escherichia coli O157:H7 EDL... gi\|25302878 - gi\|25302878\|pir\|\|A85994 probable transcription regulator yhdM [imported] - Escherichia coli (strain ...	106.0	[0..1]	[99..43]
gi\|213581871 - gi\|213581871\|ref\|ZP_03363697.1\| zinc-responsive transcriptional regulator [Salmonella enterica subsp... gi\|213612400 - gi\|213612400\|ref\|ZP_03370226.1\| zinc-responsive transcriptional regulator [Salmonella enterica subsp... gi\|213647326 - gi\|213647326\|ref\|ZP_03377379.1\| zinc-responsive transcriptional regulator [Salmonella enterica subsp... gi\|213859739 - gi\|213859739\|ref\|ZP_03385443.1\| zinc-responsive transcriptional regulator [Salmonella enterica subsp... gi\|213027595 - gi\|213027595\|ref\|ZP_03342042.1\| zinc-responsive transcriptional regulator [Salmonella enterica subsp... gi\|213052880 - gi\|213052880\|ref\|ZP_03345758.1\| zinc-responsive transcriptional regulator [Salmonella enterica subsp... gi\|213420112 - gi\|213420112\|ref\|ZP_03353178.1\| zinc-responsive transcriptional regulator [Salmonella enterica subsp... gi\|213425779 - gi\|213425779\|ref\|ZP_03358529.1\| zinc-responsive transcriptional regulator [Salmonella enterica subsp... gi\|29139996, gi\|... - gi\|29144358\|ref\|NP_807700.1\| zinc-responsive transcriptional regulator [Salmonella enterica subsp. e... gi\|213999756 - gi\|213999756\|ref\|ZP_03410491.1\| zinc-responsive transcriptional regulator [Salmonella enterica subsp... gi\|16762871 - gi\|16762871\|ref\|NP_458488.1\| zinc-responsive transcriptional regulator [Salmonella enterica subsp. e... gi\|16505178, gi\|... - gi\|25302884\|pir\|\|AE1009 probable Zn(II)-responsive regulator zntR [imported] - Salmonella enterica s...	106.0	[0..1]	[99..43]
HMRR_SINMW - HTH-type transcriptional regulator HmrR OS=Sinorhizobium medicae (strain WSM419) GN=hmrR PE=1 SV=1 HMRR_RHIME - HTH-type transcriptional regulator hmrR - Rhizobium meliloti (Sinorhizobium meliloti)	104.0	[0..1]	[98..42]
HMRR2_RHIME, HMR... - Heavy metal-dependent transcription regulator 2 OS=Rhizobium meliloti GN=hmrR2 PE=3 SV=1, (P58379) H... HMRR2_RHIME - Heavy metal-dependent transcription regulator 2 OS=Rhizobium meliloti (strain 1021) GN=hmrR2 PE=3 SV...	101.0	[0..1]	[96..42]
gi\|78687389, gi\|... - gi\|78687389\|ref\|ZP_00852139.1\| Zn(II)-responsive transcriptional regulator [Shewanella sp. ANA-3], g...	101.0	[0..1]	[96..43]
gi\|82496832, gi\|... - gi\|82496832\|ref\|ZP_00882395.1\| Zn(II)-responsive transcriptional regulator [Shewanella sp. MR-4], gi...	101.0	[0..1]	[96..43]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDLQRLKFIR HARQLGFSLE SIRELLSIRI DPEHHTCQES KGIVQERLQE VEARIAELQS  60
   61 MQRSLQRLND ACCGTAHSSV YCSILEALEQ GASGVKSGC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.30103
Match:	1q08A
Description:	Crystal structure of the Zn(II) form of E. coli ZntR, a zinc-sensing transcriptional regulator, at 1.9 A resolution (space group P212121)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits