YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|166204912, gi...
Organism:	Yersinia pestis biovar Antiqua str. B42003004
Length:	212 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|166204912, gi....

Description	E-value	Query Range	Subject Range
gi\|169890587, gi... - gi\|170082752\|ref\|YP_001732072.1\| transcriptional regulator [Escherichia coli str. K-12 substr. DH10B... EG12812 - putative transcriptional regulator / Predicted secreted protein, function unknown; gltF paralog EG12812 - putative transcriptional regulator / Predicted secreted protein, function unknown; gltF paralog gi\|238902320, gi... - gi\|238902320\|ref\|YP_002928116.1\| putative transcriptional regulator [Escherichia coli BW2952], gi\|23... gi\|85676012, gi\|... - gi\|89109981\|ref\|AP_003761.1\| predicted transcriptional regulator [Escherichia coli str. K-12 substr.... YHCF_ECOLI - Hypothetical protein yhcF precursor - Escherichia coli	5.0E-56	[5..210]	[1..237]
gi\|199606258, gi... - gi\|200389160\|ref\|ZP_03215772.1\| putative outer membrane protein [Salmonella enterica subsp. enterica... gi\|16423140, gi\|... - gi\|16767815\|ref\|NP_463430.1\| putative outer membrane protein [Salmonella typhimurium LT2], gi\|164231... gi\|194406954, gi... - gi\|194448650\|ref\|YP_002048594.1\| putative outer membrane protein [Salmonella enterica subsp. enteric... gi\|197262742, gi... - gi\|197262742\|ref\|ZP_03162816.1\| putative outer membrane protein [Salmonella enterica subsp. enterica... gi\|195632735, gi... - gi\|195632735\|gb\|EDX51189.1\| putative outer membrane protein [Salmonella enterica subsp. enterica ser... gi\|194445908, gi... - gi\|194445908\|ref\|YP_002043815.1\| putative outer membrane protein [Salmonella enterica subsp. enteric... gi\|205331427, gi... - gi\|205331427\|gb\|EDZ18191.1\| putative outer membrane protein [Salmonella enterica subsp. enterica ser... gi\|168244527, gi... - gi\|205336637\|gb\|EDZ23401.1\| putative outer membrane protein [Salmonella enterica subsp. enterica ser... lcl\|NC_016856.1_... - [gene=STM14_5494] [protein=putative outer membrane protein] [protein_id=YP_005240918.1] [location=co...	3.0E-52	[5..210]	[1..228]
gi\|77957096, gi\|... - gi\|77957096\|ref\|ZP_00821161.1\| hypothetical protein YberA_01002651 [Yersinia bercovieri ATCC 43970],...	3.0E-41	[1..212]	[1..212]
gi\|238724692, gi... - gi\|77974402\|ref\|ZP_00829942.1\| hypothetical protein YfreA_01001648 [Yersinia frederiksenii ATCC 3364...	9.0E-40	[1..212]	[1..212]
gi\|217423228, gi... - gi\|217423228\|ref\|ZP_03454730.1\| conserved hypothetical protein [Burkholderia pseudomallei 576], gi\|2... gi\|254265116, gi... - gi\|254265116\|ref\|ZP_04955981.1\| conserved hypothetical protein [Burkholderia pseudomallei 1710a], gi... gi\|242311497, gi... - gi\|242311497\|ref\|ZP_04810514.1\| conserved hypothetical protein [Burkholderia pseudomallei 1106b], gi... gi\|126232052, gi... - gi\|126458284\|ref\|YP_001074210.1\| hypothetical protein BURPS1106A_A0167 [Burkholderia pseudomallei 11... gi\|76817479, gi\|... - gi\|76817479\|ref\|YP_336790.1\| hypothetical protein BURPS1710b_A1633 [Burkholderia pseudomallei 1710b]...	7.0E-32	[5..212]	[3..218]
gi\|225929150, gi... - gi\|226198710\|ref\|ZP_03794274.1\| conserved hypothetical protein [Burkholderia pseudomallei Pakistan 9... gi\|167826605 - gi\|167826605\|ref\|ZP_02458076.1\| hypothetical protein Bpseu9_23220 [Burkholderia pseudomallei 9] gi\|53721159, gi\|... - gi\|53721159\|ref\|YP_110144.1\| hypothetical protein BPSS0123 [Burkholderia pseudomallei K96243], gi\|52...	2.0E-30	[5..212]	[3..218]

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Predicted Domain #1

Region A:
Residues: [1-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKPLTQIAI LSSLVVSISA ASAAVPTAEL KVVGTMTVPS CTVVSPDAGI YDIGKLSSSL  60
   61 VKPGTTVTVL AQINKTWTVN CDANTYLNFT PVDNRVGSSS DGSAAAFGLG KINDTGKIGY 120
  121 YTVQMRNATV DGKKSGVFTA SSASFSQADT SYLNRGQRTG WAAGANTQNS GKVFVADLLV 180
  181 TPVLAGTNTM NGAITEDAKI DGSLTMNFAF GI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.64
Match:	2j2zB
Description:	No description for 2j2zB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits