YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|170020625, gi...
Organism:	Escherichia coli ATCC 8739
Length:	195 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|170020625, gi....

Description	E-value	Query Range	Subject Range
gi\|193066338, gi... - gi\|75255605\|ref\|ZP_00727389.1\| COG0680: Ni,Fe-hydrogenase maturation factor [Escherichia coli E22], ... gi\|194429837, gi... - gi\|75208927\|ref\|ZP_00709200.1\| COG0680: Ni,Fe-hydrogenase maturation factor [Escherichia coli B171],...	237.0	[0..1]	[195..1]
gi\|191166575, gi... - gi\|75230249\|ref\|ZP_00716746.1\| COG0680: Ni,Fe-hydrogenase maturation factor [Escherichia coli B7A], ...	237.0	[0..1]	[195..1]
gi\|110804989, gi... - gi\|110804989\|ref\|YP_688509.1\| hydrogenase 1 maturation protease [Shigella flexneri 5 str. 8401], gi\|...	236.0	[0..1]	[195..1]
gi\|83570618, gi\|... - gi\|83570618\|ref\|ZP_00922062.1\| COG0680: Ni,Fe-hydrogenase maturation factor [Shigella dysenteriae 10...	235.0	[0..1]	[195..1]
gi\|75190042, gi\|... - gi\|75190042\|ref\|ZP_00703309.1\| COG0680: Ni,Fe-hydrogenase maturation factor [Escherichia coli E24377...	235.0	[0..1]	[195..1]
gi\|24112387, gi\|... - gi\|24112387\|ref\|NP_706897.1\| hydrogenase 1 maturation protease [Shigella flexneri 2a str. 301], gi\|2... gi\|30040759, gi\|... - gi\|30062513\|ref\|NP_836684.1\| hydrogenase 1 maturation protease [Shigella flexneri 2a str. 2457T], gi...	233.0	[0..1]	[195..1]
gi\|227884066, gi... - gi\|227884066\|ref\|ZP_04001871.1\| hydrogenase 1 maturation protease [Escherichia coli 83972], gi\|22783... gi\|26247001, gi\|... - gi\|26247001\|ref\|NP_753041.1\| hydrogenase 1 maturation protease [Escherichia coli CFT073], gi\|2610740...	233.0	[0..1]	[195..1]
gi\|187730645, gi... - gi\|75175465\|ref\|ZP_00695685.1\| COG0680: Ni,Fe-hydrogenase maturation factor [Shigella boydii BS512],...	232.0	[0..1]	[195..1]
gi\|82544702, gi\|... - gi\|82544702\|ref\|YP_408649.1\| hydrogenase 1 maturation protease [Shigella boydii Sb227], gi\|81246113\|...	229.0	[0..1]	[195..1]
gi\|75240593, gi\|... - gi\|75240593\|ref\|ZP_00724510.1\| COG0680: Ni,Fe-hydrogenase maturation factor [Escherichia coli F11], ... gi\|110641164, gi... - gi\|110641164\|ref\|YP_668894.1\| hydrogenase 1 maturation protease [Escherichia coli 536], gi\|110342756...	228.0	[0..1]	[195..1]

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Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQRVVVMG LGNLLWADEG FGVRVAERLY AHYHWPEYVE IVDGGTQGLN LLGYVESASH  60
   61 LLILDAIDYG LEPGTLRTYA GERIPAYLSA KKMSLHQNSF SEVLALADIR GHLPAHIALV 120
  121 GLQPAMLDDY GGSLSELARE QLPAAEQAAL AQLAAWGIVP QPANESRCLN YDCLSMENYE 180
  181 GVRLRQYRMT QEEQG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.0
Match:	1cfzA
Description:	Hydrogenase maturating endopeptidase HybD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.210430303475354	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: