YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|189369899, gi...
Organism:	Escherichia coli O157:H7 str. EC4501
Length:	81 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|189369899, gi....

Description	E-value	Query Range	Subject Range
gi\|89104192, gi\|... - gi\|89104192\|ref\|ZP_01176742.1\| COG0425: Predicted redox protein, regulator of disulfide bond formati... gi\|145212384, gi... - gi\|145600688\|ref\|YP_001164764.1\| cell developmental protein SirA [Yersinia pestis Pestoides F], gi\|1... gi\|108810309, gi... - gi\|108810309\|ref\|YP_646076.1\| cell developmental protein SirA [Yersinia pestis Nepal516], gi\|1087739... gi\|108806199, gi... - gi\|108806199\|ref\|YP_650115.1\| cell developmental protein SirA [Yersinia pestis Antiqua], gi\|10877811... gi\|45442979, gi\|... - gi\|45442979\|ref\|NP_994518.1\| hypothetical protein YP_3227 [Yersinia pestis biovar Microtus str. 9100... gi\|21957098, gi\|... - gi\|22124324\|ref\|NP_667747.1\| hypothetical protein y0409 [Yersinia pestis KIM], gi\|21957098\|gb\|AAM839... gi\|166213499, gi... - gi\|166213499\|ref\|ZP_02239534.1\| sulfurtransferase TusA [Yersinia pestis biovar Antiqua str. B4200300... gi\|166011690, gi... - gi\|166011690\|ref\|ZP_02232588.1\| sulfurtransferase TusA [Yersinia pestis biovar Antiqua str. E1979001... gi\|166961101, gi... - gi\|167420972\|ref\|ZP_02312725.1\| sulfurtransferase TusA [Yersinia pestis biovar Orientalis str. MG05-... gi\|167401858, gi... - gi\|167401858\|ref\|ZP_02307346.1\| sulfurtransferase TusA [Yersinia pestis biovar Antiqua str. UG05-045... gi\|167054819, gi... - gi\|167426300\|ref\|ZP_02318053.1\| sulfurtransferase TusA [Yersinia pestis biovar Mediaevalis str. K197... gi\|162421779, gi... - gi\|77633440\|ref\|ZP_00795571.1\| COG0425: Predicted redox protein, regulator of disulfide bond formati... gi\|165926318, gi... - gi\|165926318\|ref\|ZP_02222150.1\| sulfurtransferase TusA [Yersinia pestis biovar Orientalis str. F1991...	115.0	[0..1]	[80..48]
gi\|194431061, gi... - gi\|83571605\|ref\|ZP_00923045.1\| COG0425: Predicted redox protein, regulator of disulfide bond formati...	113.0	[0..1]	[81..1]
TUSA_YERPS - Sulfurtransferase TusA OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=tusA PE=3 SV=1 gi\|218930824, gi... - gi\|218930824\|ref\|YP_002348699.1\| sulfur transfer protein SirA [Yersinia pestis CO92], gi\|16123956\|re... TUSA_YERPS, SIRA... - Sulfurtransferase TusA OS=Yersinia pseudotuberculosis GN=tusA PE=3 SV=1, (Q66FX1) Protein sirA TUSA_YERPE - Sulfurtransferase TusA OS=Yersinia pestis GN=tusA PE=3 SV=1 gi\|161484896 - gi\|161484896\|ref\|NP_667747.2\| cell developmental protein SirA [Yersinia pestis KIM] gi\|161511321 - gi\|161511321\|ref\|NP_994518.2\| cell developmental protein SirA [Yersinia pestis biovar Microtus str. ... gi\|167468876 - gi\|167468876\|ref\|ZP_02333580.1\| sulfurtransferase TusA [Yersinia pestis FV-1] gi\|229900072, gi... - gi\|229900072\|ref\|ZP_04515209.1\| sulfur transfer protein [Yersinia pestis biovar Orientalis str. Indi... TUSA_YERPY - Sulfurtransferase TusA OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=tusA PE=3 SV=1 gi\|229837149, gi... - gi\|229837149\|ref\|ZP_04457314.1\| sulfur transfer protein [Yersinia pestis Pestoides A], gi\|229706092\|... TUSA_YERPB - Sulfurtransferase TusA OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=tusA PE=3 SV=1 gi\|229900482, gi... - gi\|229900482\|ref\|ZP_04515611.1\| sulfur transfer protein [Yersinia pestis Nepal516], gi\|229682501\|gb\|... gi\|229358045 - gi\|229358045\|ref\|YP_650115.2\| cell developmental protein SirA [Yersinia pestis Antiqua] gi\|229270462 - gi\|229270462\|ref\|YP_001605161.2\| cell developmental protein SirA [Yersinia pestis Angola] TUSA_YERP3 - Sulfurtransferase TusA OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=tusA PE=3 S... gi\|149289427, gi... - gi\|153997121\|ref\|ZP_02022254.1\| sulfurtransferase [Yersinia pestis CA88-4125], gi\|149289427\|gb\|EDM39...	112.0	[0..1]	[80..1]
gi\|77960572, gi\|... - gi\|77960572\|ref\|ZP_00824438.1\| COG0425: Predicted redox protein, regulator of disulfide bond formati...	111.0	[0..1]	[81..1]
gi\|238784423, gi... - gi\|77957883\|ref\|ZP_00821927.1\| COG0425: Predicted redox protein, regulator of disulfide bond formati...	111.0	[0..1]	[81..1]
gi\|238789404, gi... - gi\|77973653\|ref\|ZP_00829199.1\| COG0425: Predicted redox protein, regulator of disulfide bond formati...	111.0	[0..1]	[81..1]
gi\|238727142, gi... - gi\|77978517\|ref\|ZP_00833945.1\| COG0425: Predicted redox protein, regulator of disulfide bond formati... TUSA_YERE8 - Sulfurtransferase TusA OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 808...	110.0	[0..1]	[81..1]
gi\|224585370, gi... - gi\|224585370\|ref\|YP_002639169.1\| hypothetical protein SPC_3647 [Salmonella enterica subsp. enterica ... gi\|205360358, gi... - gi\|205360358\|ref\|ZP_02682666.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205344517, gi... - gi\|205359568\|ref\|ZP_02830605.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205359045, gi... - gi\|205359045\|ref\|ZP_02666662.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205358594, gi... - gi\|205358594\|ref\|ZP_02657783.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205357618, gi... - gi\|205357618\|ref\|ZP_02571893.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205356888, gi... - gi\|205356888\|ref\|ZP_02342963.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|204322141, gi... - gi\|204928708\|ref\|ZP_03219907.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|200388605, gi... - gi\|200388605\|ref\|ZP_03215217.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197937325, gi... - gi\|198242809\|ref\|YP_002217537.1\| hypothetical protein SeD_A3950 [Salmonella enterica subsp. enterica... gi\|197291274, gi... - gi\|197300670\|ref\|ZP_02660230.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197240639, gi... - gi\|197262384\|ref\|ZP_03162458.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197249921, gi... - gi\|197249921\|ref\|YP_002148501.1\| hypothetical protein SeAg_B3780 [Salmonella enterica subsp. enteric... gi\|195632354, gi... - gi\|195873796\|ref\|ZP_02699033.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|194710928, gi... - gi\|194735426\|ref\|YP_002116513.1\| hypothetical protein SeSA_A3770 [Salmonella enterica subsp. enteric... gi\|194457962, gi... - gi\|194471598\|ref\|ZP_03077582.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|194406049, gi... - gi\|194447745\|ref\|YP_002047603.1\| hypothetical protein SeHA_C3890 [Salmonella enterica subsp. enteric... gi\|194444607, gi... - gi\|194444607\|ref\|YP_002042823.1\| hypothetical protein SNSL254_A3847 [Salmonella enterica subsp. ente... gi\|161616626, gi... - gi\|161616626\|ref\|YP_001590591.1\| hypothetical protein SPAB_04443 [Salmonella enterica subsp. enteric... gi\|62182077, gi\|... - gi\|62182077\|ref\|YP_218494.1\| hypothetical protein SC3507 [Salmonella enterica subsp. enterica serova...	110.0	[0..1]	[80..31]
gi\|86139909, gi\|... - gi\|86139909\|ref\|ZP_01058474.1\| SirA family protein [Roseobacter sp. MED193], gi\|85823327\|gb\|EAQ43537...	110.0	[0..1]	[81..1]
gi\|22778336 - gi\|22778336\|dbj\|BAC14605.1\| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]	110.0	[0..6]	[80..16]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDLFSSPDH TLDALGLRCP EPVMMVRKTV RNMQPGETLL IIADDPATTR DIPGFCTFME  60
   61 HELVAKETDG LPYRYLIRKG G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.30103
Match:	1dcjA
Description:	SirA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits