YRC Public Data Repository - Protein Structure Prediction

Protein:	YGFZ_ECO55
Organism:	Escherichia coli 55989
Length:	326 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGFZ_ECO55.

Description	E-value	Query Range	Subject Range
GCST_THETN - Aminomethyltransferase OS=Thermoanaerobacter tengcongensis GN=gcvT PE=3 SV=1 GCST_CALS4 - Aminomethyltransferase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM... gi\|214035115, gi... - gi\|254478933\|ref\|ZP_05092294.1\| glycine cleavage system T protein [Carboxydibrachium pacificum DSM 1...	348.0	[0..1]	[319..34]
gi\|228648434, gi... - gi\|229135049\|ref\|ZP_04263854.1\| Aminomethyltransferase [Bacillus cereus BDRD-ST196], gi\|228648434\|gb... gi\|229013446, gi... - gi\|229013446\|ref\|ZP_04170583.1\| Aminomethyltransferase [Bacillus mycoides DSM 2048], gi\|228747858\|gb... GCST_BACWK - Aminomethyltransferase OS=Bacillus weihenstephanensis (strain KBAB4) GN=gcvT PE=3 SV=1	339.0	[0..1]	[323..28]
gi\|47555460, gi\|... - gi\|47567783\|ref\|ZP_00238491.1\| glycine cleavage system T protein [Bacillus cereus G9241], gi\|4755546...	339.0	[0..1]	[323..28]
gi\|195992402, gi... - gi\|196034863\|ref\|ZP_03102270.1\| glycine cleavage system T protein [Bacillus cereus W], gi\|195992402\|... GCST_BACCZ - Aminomethyltransferase OS=Bacillus cereus (strain ZK / E33L) GN=gcvT PE=3 SV=1	339.0	[0..1]	[323..28]
gi\|229140961, gi... - gi\|229140961\|ref\|ZP_04269505.1\| Aminomethyltransferase [Bacillus cereus BDRD-ST26], gi\|228642537\|gb\|... GCST_BACCQ - Aminomethyltransferase OS=Bacillus cereus (strain Q1) GN=gcvT PE=3 SV=1 GCST_BACC1 - Aminomethyltransferase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=gcvT PE=3 SV=1 GCST_BACC7 - Aminomethyltransferase OS=Bacillus cereus (strain AH187) GN=gcvT PE=3 SV=1	338.0	[0..1]	[323..28]
gi\|254741374 - gi\|254741374\|ref\|ZP_05199061.1\| glycine cleavage system aminomethyltransferase T [Bacillus anthracis... gi\|254753991 - gi\|254753991\|ref\|ZP_05206026.1\| glycine cleavage system aminomethyltransferase T [Bacillus anthracis... gi\|254757862 - gi\|254757862\|ref\|ZP_05209889.1\| glycine cleavage system aminomethyltransferase T [Bacillus anthracis... gi\|167634578, gi... - gi\|167634578\|ref\|ZP_02392898.1\| glycine cleavage system T protein [Bacillus anthracis str. A0442], g... gi\|164710988, gi... - gi\|165873271\|ref\|ZP_02217880.1\| glycine cleavage system T protein [Bacillus anthracis str. A0488], g... gi\|170668677, gi... - gi\|170687482\|ref\|ZP_02878699.1\| glycine cleavage system T protein [Bacillus anthracis str. A0465], g... gi\|167513500, gi... - gi\|167638652\|ref\|ZP_02396928.1\| glycine cleavage system T protein [Bacillus anthracis str. A0193], g... GCST_BACHK - Aminomethyltransferase OS=Bacillus thuringiensis subsp. konkukian GN=gcvT PE=3 SV=1 GCST_BACCR - Aminomethyltransferase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIM... GCST_BACAN - Aminomethyltransferase OS=Bacillus anthracis GN=gcvT PE=3 SV=1 GCST_BACHK - Aminomethyltransferase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=gcvT PE=3 SV=1 gi\|177655891, gi... - gi\|177655891\|ref\|ZP_02937083.1\| glycine cleavage system T protein [Bacillus anthracis str. A0174], g... gi\|49187128, gi\|... - gi\|49187128\|ref\|YP_030380.1\| glycine cleavage system aminomethyltransferase T [Bacillus anthracis st... gi\|170125757, gi... - gi\|170709331\|ref\|ZP_02899747.1\| glycine cleavage system T protein [Bacillus anthracis str. A0389], g... gi\|47529744, gi\|... - gi\|47529744\|ref\|YP_021093.1\| glycine cleavage system aminomethyltransferase T [Bacillus anthracis st... gi\|206733957, gi... - gi\|206971185\|ref\|ZP_03232136.1\| glycine cleavage system T protein [Bacillus cereus AH1134], gi\|20673... gi\|30264300, gi\|... - gi\|30264300\|ref\|NP_846677.1\| glycine cleavage system aminomethyltransferase T [Bacillus anthracis st... gi\|190566093, gi... - gi\|190566093\|ref\|ZP_03019012.1\| glycine cleavage system T protein [Bacillus anthracis Tsiankovskii-I... GCST_BACC0 - Aminomethyltransferase OS=Bacillus cereus (strain AH820) GN=gcvT PE=3 SV=1 GCST_BACAC - Aminomethyltransferase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=gcvT PE=3 SV=1 gi\|228842784, gi... - gi\|228916861\|ref\|ZP_04080424.1\| Aminomethyltransferase [Bacillus thuringiensis serovar pulsiensis BG... gi\|228929271, gi... - gi\|228929271\|ref\|ZP_04092298.1\| Aminomethyltransferase [Bacillus thuringiensis serovar pondicheriens... gi\|228954511, gi... - gi\|228954511\|ref\|ZP_04116536.1\| Aminomethyltransferase [Bacillus thuringiensis serovar kurstaki str.... gi\|228799190, gi... - gi\|228960493\|ref\|ZP_04122143.1\| Aminomethyltransferase [Bacillus thuringiensis serovar pakistani str... gi\|228987418, gi... - gi\|228987418\|ref\|ZP_04147538.1\| Aminomethyltransferase [Bacillus thuringiensis serovar tochigiensis ... gi\|229047921, gi... - gi\|229047921\|ref\|ZP_04193497.1\| Aminomethyltransferase [Bacillus cereus AH676], gi\|228723378\|gb\|EEL7... gi\|21402278, gi\|... - gi\|65321610\|ref\|ZP_00394569.1\| COG0404: Glycine cleavage system T protein (aminomethyltransferase) [... gi\|229071730, gi... - gi\|229071730\|ref\|ZP_04204945.1\| Aminomethyltransferase [Bacillus cereus F65185], gi\|228711325\|gb\|EEL... gi\|228701792, gi... - gi\|229081485\|ref\|ZP_04213984.1\| Aminomethyltransferase [Bacillus cereus Rock4-2], gi\|228701792\|gb\|EE... gi\|229111700, gi... - gi\|229111700\|ref\|ZP_04241248.1\| Aminomethyltransferase [Bacillus cereus Rock1-15], gi\|228671694\|gb\|E... gi\|229123745, gi... - gi\|229123745\|ref\|ZP_04252940.1\| Aminomethyltransferase [Bacillus cereus 95/8201], gi\|228659880\|gb\|EE... gi\|229129506, gi... - gi\|229129506\|ref\|ZP_04258477.1\| Aminomethyltransferase [Bacillus cereus BDRD-Cer4], gi\|228654111\|gb\|... gi\|228636623, gi... - gi\|229146795\|ref\|ZP_04275160.1\| Aminomethyltransferase [Bacillus cereus BDRD-ST24], gi\|228636623\|gb\|... gi\|229180504, gi... - gi\|229180504\|ref\|ZP_04307846.1\| Aminomethyltransferase [Bacillus cereus 172560W], gi\|228602928\|gb\|EE... gi\|229192437, gi... - gi\|229192437\|ref\|ZP_04319400.1\| Aminomethyltransferase [Bacillus cereus ATCC 10876], gi\|228591014\|gb... GCST_BACAA - Aminomethyltransferase OS=Bacillus anthracis (strain A0248) GN=gcvT PE=3 SV=1 gi\|254683988 - gi\|254683988\|ref\|ZP_05147848.1\| glycine cleavage system aminomethyltransferase T [Bacillus anthracis... gi\|254721822 - gi\|254721822\|ref\|ZP_05183611.1\| glycine cleavage system aminomethyltransferase T [Bacillus anthracis... gi\|254736336 - gi\|254736336\|ref\|ZP_05194042.1\| glycine cleavage system aminomethyltransferase T [Bacillus anthracis...	337.0	[0..1]	[323..28]
GCST_BACCN - Aminomethyltransferase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98)...	336.0	[0..1]	[323..28]
GCST_HALOH - Aminomethyltransferase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=gcvT PE=3 SV...	336.0	[0..1]	[322..25]
GCST_GEOKA - Aminomethyltransferase OS=Geobacillus kaustophilus GN=gcvT PE=3 SV=1 GCST_GEOKA - Aminomethyltransferase OS=Geobacillus kaustophilus (strain HTA426) GN=gcvT PE=3 SV=1	331.0	[0..1]	[323..26]
gi\|89086066, gi\|... - gi\|89099220\|ref\|ZP_01172098.1\| aminomethyltransferase [Bacillus sp. NRRL B-14911], gi\|89086066\|gb\|EA...	331.0	[0..1]	[323..28]

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Predicted Domain #1

Region A:
Residues: [1-326]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFTPFPPRQ PTASARLPLT LMTLDDWALA TITGADSEKY MQGQVTADVS QMAEDQHLLA  60
   61 AHCDAKGKMW SNLRLFRDGD GFAWIERRSV REPQLTELKK YAVFSKVTIA PDDERVLLGV 120
  121 AGFQARAALA NLFSELPSKE KQVVKEGATT LLWFEHPAER FLIVTDEATA NMLTDKLRGE 180
  181 AELNNSQQWL ALNIEAGFPV IDAANSGQFI PQATNLQALG GISFKKGCYT GQEMVARAKF 240
  241 RGANKRALWL LAGSASRLPE AGEDLELKMG ENWRRTGTVL AAVKLEDGQV VVQVVMNNDM 300
  301 EPDSIFRVRD DANTLHIEPL PYSLEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.0
Match:	1vlyA
Description:	Crystal structure of Unknown protein from 2D-page (Spot PR51) (b2898) from Escherichia coli k12 at 1.30 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methyltransferase activity	2.71219746860743	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	2.63021060808724	bayes_pls_golite062009
catalytic activity	1.65079399897053	bayes_pls_golite062009
transferase activity	1.3676947912529	bayes_pls_golite062009
binding	0.132837587724643	bayes_pls_golite062009
aminomethyltransferase activity	0.0576067162699821	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: