YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167420529, gi...
Organism:	Yersinia pestis biovar Orientalis str. MG05-1020
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167420529, gi....

Description	E-value	Query Range	Subject Range
gi\|77978584, gi\|... - gi\|77978584\|ref\|ZP_00834011.1\| COG3076: Uncharacterized protein conserved in bacteria [Yersinia inte...	8.0E-46	[1..143]	[23..165]
gi\|77960005 - gi\|77960005\|ref\|ZP_00823909.1\| COG3076: Uncharacterized protein conserved in bacteria [Yersinia moll...	1.0E-45	[1..143]	[23..165]
gi\|77974069, gi\|... - gi\|77974069\|ref\|ZP_00829612.1\| COG3076: Uncharacterized protein conserved in bacteria [Yersinia fred...	1.0E-44	[1..119]	[23..141]
gi\|15603430, gi\|... - gi\|15603430\|ref\|NP_246504.1\| hypothetical protein PM1565 [Pasteurella multocida subsp. multocida str...	3.0E-44	[6..136]	[3..136]
gi\|238715531, gi... - gi\|77956489\|ref\|ZP_00820583.1\| COG3076: Uncharacterized protein conserved in bacteria [Yersinia berc...	1.0E-43	[1..143]	[23..165]
gi\|148826657, gi... - gi\|148826657\|ref\|YP_001291410.1\| hypothetical protein CGSHiEE_08640 [Haemophilus influenzae PittEE],... gi\|68057474, gi\|... - gi\|68249275\|ref\|YP_248387.1\| hypothetical protein NTHI0823 [Haemophilus influenzae 86-028NP], gi\|680...	6.0E-43	[5..120]	[2..117]
gi\|170718517, gi... - gi\|32028645\|ref\|ZP_00131801.1\| COG3076: Uncharacterized protein conserved in bacteria [Haemophilus s... gi\|23468052, gi\|... - gi\|23468052\|ref\|ZP_00123623.1\| COG3076: Uncharacterized protein conserved in bacteria [Haemophilus s...	7.0E-43	[7..131]	[4..131]
gi\|91075384, gi\|... - gi\|91213810\|ref\|YP_543796.1\| hypothetical protein UTI89_C4861 [Escherichia coli UTI89], gi\|91075384\|... gi\|218430206, gi... - gi\|218692642\|ref\|YP_002400854.1\| hypothetical protein ECED1_5108 [Escherichia coli ED1a], gi\|2184302... gi\|191170828, gi... - gi\|75242360\|ref\|ZP_00726122.1\| COG3076: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|115515723, gi... - gi\|117626599\|ref\|YP_859922.1\| hypothetical protein APECO1_2139 [Escherichia coli APEC O1], gi\|115515... gi\|218702958, gi... - gi\|218702958\|ref\|YP_002410587.1\| hypothetical protein ECIAI39_4728 [Escherichia coli IAI39], gi\|2183... gi\|237703930, gi... - gi\|237703930\|ref\|ZP_04534411.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690...	2.0E-42	[1..120]	[1..120]
gi\|148719114, gi... - gi\|148827872\|ref\|YP_001292625.1\| hypothetical protein CGSHiGG_06790 [Haemophilus influenzae PittGG],... gi\|42628986 - gi\|42628986\|ref\|ZP_00154537.1\| COG3076: Uncharacterized protein conserved in bacteria [Haemophilus i...	2.0E-42	[5..125]	[2..122]
Y700_HAEIN, YJGD... - (P44831) Protein HI0700, Uncharacterized protein HI_0700 OS=Haemophilus influenzae GN=HI_0700 PE=1 S... RRAB_HAEIN - Regulator of ribonuclease activity B OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20...	2.0E-42	[5..120]	[2..117]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANRELLDEQ RDETRLIIEE LLEDGSDPDA LYTIEHHLSA EKFEVLEKAA VEAFKLGYEV  60
   61 TDAEELEVED GSMVMCCDVI SEVALNAEII DAQVEQLVAL AEACGVNYDG WGTYYEDPNA 120
  121 EDDEDGEYDD EELVDEDDDG KRH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	1nxiA
Description:	Hypothetical protein VC0424
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits