YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|165925657, gi...
Organism:	Yersinia pestis biovar Orientalis str. F1991016
Length:	884 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|165925657, gi....

Description	E-value	Query Range	Subject Range
IF2_YERPG - Translation initiation factor IF-2 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=infB PE=3 SV=1	0.0	[1..884]	[1..884]
IF2_YERPA - Translation initiation factor IF-2 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=infB PE=3 SV=1 gi\|167049282, gi... - gi\|167401257\|ref\|ZP_02306757.1\| translation initiation factor IF-2 [Yersinia pestis biovar Antiqua s...	0.0	[1..884]	[1..884]
gi\|77961869, gi\|... - gi\|77961869\|ref\|ZP_00825698.1\| COG0532: Translation initiation factor 2 (IF-2; GTPase) [Yersinia mol...	0.0	[1..883]	[1..891]
gi\|238783515, gi... - gi\|77958791\|ref\|ZP_00822819.1\| COG0532: Translation initiation factor 2 (IF-2; GTPase) [Yersinia ber...	0.0	[1..883]	[1..891]
gi\|167423417, gi... - gi\|167423417\|ref\|ZP_02315170.1\| translation initiation factor IF-2 [Yersinia pestis biovar Mediaeval... gi\|166204193, gi... - gi\|166214618\|ref\|ZP_02240653.1\| translation initiation factor IF-2 [Yersinia pestis biovar Antiqua s... IF2_YERP3 - Translation initiation factor IF-2 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN... IF2_YERPS - Translation initiation factor IF-2 OS=Yersinia pseudotuberculosis GN=infB PE=3 SV=1 IF2_YERPB - Translation initiation factor IF-2 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=infB... gi\|229896637, gi... - gi\|229896637\|ref\|ZP_04511804.1\| protein chain initiation factor 2, IF2 [Yersinia pestis Pestoides A]... IF2_YERPS - Translation initiation factor IF-2 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=inf... IF2_YERPY - Translation initiation factor IF-2 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=inf... IF2_YERPE - Translation initiation factor IF-2 OS=Yersinia pestis GN=infB PE=3 SV=2 gi\|45435298, gi\|... - gi\|45440441\|ref\|NP_991980.1\| translation initiation factor IF-2 [Yersinia pestis biovar Microtus str... gi\|21957406, gi\|... - gi\|22124602\|ref\|NP_668025.1\| translation initiation factor IF-2 [Yersinia pestis KIM], gi\|21957406\|g... IF2_YERPP - Translation initiation factor IF-2 OS=Yersinia pestis (strain Pestoides F) GN=infB PE=3 SV=1 IF2_YERPN - Translation initiation factor IF-2 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=infB PE=3 SV=...	0.0	[1..884]	[1..892]
gi\|77978623, gi\|... - gi\|77978623\|ref\|ZP_00834050.1\| COG0532: Translation initiation factor 2 (IF-2; GTPase) [Yersinia int...	0.0	[1..883]	[1..891]
gi\|238724381, gi... - gi\|77974019\|ref\|ZP_00829562.1\| COG0532: Translation initiation factor 2 (IF-2; GTPase) [Yersinia fre...	0.0	[1..884]	[1..892]
IF2_ENTCL - Translation initiation factor IF-2 OS=Enterobacter cloacae GN=infB PE=3 SV=1	0.0	[1..884]	[1..897]
IF2_KLEOX - Translation initiation factor IF-2 OS=Klebsiella oxytoca GN=infB PE=3 SV=1	0.0	[1..883]	[1..895]
IF2_SODGM - Translation initiation factor IF-2 OS=Sodalis glossinidius (strain morsitans) GN=infB PE=3 SV=1	0.0	[1..884]	[1..894]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDVTVKSLA AEIQTPVDRL VQQFADAGIK KSDVDSVTQQ EKEILLAHLN REHGSVPNKL  60
   61 TLQRKTRSTL NIPSTGGKSK SVQIEVRKKR TYVNTPEAEQ AKAEEQAQRE AEATAQKIAE 120
  121 EKAKREAEEQ AKREAAEKAK RQAAEKEKVT NQQTDEKTKP AQTDKARREA EAAELKRSVE 180
  181 EETRRKVEED AKRVAEEARK MAAENEGKWP E

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.44
Match:	1miuA
Description:	BRCA2 helical domain; BRCA2 tower domain; OB-fold domains of BRCA2
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [212-376]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVAEQTESAD YHVTTSQHAR AAEDENDAKV EGDRRSRTRG GKATKQKKGN KLSESKADRE  60
   61 EARAVGRKGK RKPSTLQQSF NKPVVAVNRD VVIGETVTVA ELANKMAVKG SQVIKAMMKL 120
  121 GAMATINQVI DQETAQLVAE EMGHKVILRR ENELEEALMS DRDIG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.69897
Match:	2e87A
Description:	No description for 2e87A was found.

Predicted Domain #3

Region A:
Residues: [377-884]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VEAAAEHRAP VVTIMGHVDH GKTSLLDYIR STKVASGEAG GITQHIGAYH VETENGMITF  60
   61 LDTPGHAAFT SMRARGAQAT DIVVLVVAAD DGVMPQTIEA IQHAKAANVP VVVAVNKIDK 120
  121 PEADPDRVKT ELSQYGIQPE EWGGESQFIN VSAKAGIGID ELLNAILLQA EVLELKAVRT 180
  181 GMANGVVIES FLDKGRGPVA TVLVQQGTLN KGDIVLCGFE YGRVRAMRDE LGRDITSAGP 240
  241 SIPVEILGLS SVPAAGDEVT VVRDEKKARE VALYRQGKFR EVKLARQQKS KLENMFANMT 300
  301 EGEVSELNIV IKSDVQGSCE AICDSLEKLS TDEVKVRIVG SGVGGITETD ATLAAASGAI 360
  361 ILGFNVRADA SARRVVETEG LDLRYYSVIY SLIDEVKQAM SGMLAPEYKQ QIIGLAEVRD 420
  421 VFKSPKFGAI AGCMVTEGVI KRNNPIRVLR DNVVIYEGEL ESLRRFKDDV SEVRNGMECG 480
  481 IGVKNYNDVR TGDVIEVFEI IEIKRTIA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	114.0
Match:	1zo1I
Description:	IF2, IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits