YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167400410, gi...
Organism:	Yersinia pestis biovar Antiqua str. UG05-0454
Length:	105 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167400410, gi....

Description	E-value	Query Range	Subject Range
gi\|1788317, gi\|4... - gi\|49176178\|ref\|NP_416511.3\| hypothetical protein b2007 [Escherichia coli K12], gi\|1788317\|gb\|AAC750... gi\|30063449, gi\|... - gi\|30063449\|ref\|NP_837620.1\| hypothetical protein S2177 [Shigella flexneri 2a str. 2457T], gi\|300417... gi\|12516185, gi\|... - gi\|15802486\|ref\|NP_288512.1\| hypothetical protein Z3168 [Escherichia coli O157:H7 EDL933], gi\|125161... gi\|13362277 - gi\|13362277\|dbj\|BAB36232.1\| putative alpha helix protein [Escherichia coli O157:H7 str. Sakai] gi\|117624211, gi... - gi\|117624211\|ref\|YP_853124.1\| hypothetical protein APECO1_1105 [Escherichia coli APEC O1], gi\|115513... gi\|218699405, gi... - gi\|218699405\|ref\|YP_002407034.1\| hypothetical protein ECIAI39_1011 [Escherichia coli IAI39], gi\|2183... gi\|218352364, gi... - gi\|218695632\|ref\|YP_002403299.1\| hypothetical protein EC55989_2266 [Escherichia coli 55989], gi\|2183... gi\|74312549, gi\|... - gi\|74312549\|ref\|YP_310968.1\| hypothetical protein SSON_2077 [Shigella sonnei Ss046], gi\|73856026\|gb\|... gi\|218690069, gi... - gi\|218690069\|ref\|YP_002398281.1\| hypothetical protein ECED1_2358 [Escherichia coli ED1a], gi\|2184276... gi\|218365657, gi... - gi\|218558888\|ref\|YP_002391801.1\| hypothetical protein ECS88_2106 [Escherichia coli S88], gi\|21836565... gi\|89108827, gi\|... - gi\|89108827\|ref\|AP_002607.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|173... gi\|227835408, gi... - gi\|227887058\|ref\|ZP_04004863.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783540... gi\|91072869, gi\|... - gi\|91211295\|ref\|YP_541281.1\| hypothetical protein UTI89_C2282 [Escherichia coli UTI89], gi\|91072869\|... gi\|242377653, gi... - gi\|251785380\|ref\|YP_002999684.1\| hypothetical protein B21_01896 [Escherichia coli BL21], gi\|24237765... gi\|218432646, gi... - gi\|218705549\|ref\|YP_002413068.1\| hypothetical protein ECUMN_2353 [Escherichia coli UMN026], gi\|21843... gi\|237704465, gi... - gi\|237704465\|ref\|ZP_04534946.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|254288784, gi... - gi\|254288784\|ref\|YP_003054532.1\| hypothetical protein ECD_01910 [Escherichia coli BL21(DE3)], gi\|253... gi\|253973897, gi... - gi\|254161996\|ref\|YP_003045104.1\| hypothetical protein ECB_01910 [Escherichia coli B str. REL606], gi... gi\|218554569, gi... - gi\|218554569\|ref\|YP_002387482.1\| hypothetical protein ECIAI1_2077 [Escherichia coli IAI1], gi\|218361... gi\|170081637, gi... - gi\|170081637\|ref\|YP_001730957.1\| hypothetical protein ECDH10B_2154 [Escherichia coli str. K-12 subst... gi\|13362277 - gi\|13362277\|dbj\|BAB36232.1\| putative alpha helix protein [Escherichia coli O157:H7] gi\|209748274, gi... - gi\|92110362\|emb\|CAJ87631.1\| hypothetical protein [Escherichia coli], pir\|\|F64965 hypothetical protei... gi\|26248381, gi\|... - gi\|26248381\|ref\|NP_754421.1\| hypothetical protein c2534 [Escherichia coli CFT073], gi\|26108785\|gb\|AA... gi\|24052411, gi\|... - gi\|24113391\|ref\|NP_707901.1\| hypothetical protein SF2067 [Shigella flexneri 2a str. 301], gi\|2405241...	154.0	[0..4]	[105..25]
gi\|82543384, gi\|... - gi\|82543384\|ref\|YP_407331.1\| hypothetical protein SBO_0832 [Shigella boydii Sb227], gi\|81244795\|gb\|A...	154.0	[0..4]	[105..25]
gi\|82777462, gi\|... - gi\|82777462\|ref\|YP_403811.1\| hypothetical protein SDY_2237 [Shigella dysenteriae Sd197], gi\|81241610...	154.0	[0..4]	[105..25]
gi\|167421753, gi... - gi\|167421753\|ref\|ZP_02313506.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167057013, gi... - gi\|167424164\|ref\|ZP_02315917.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|89105280, gi\|... - gi\|89105280\|ref\|ZP_01177802.1\| COG2926: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|21959483, gi\|... - gi\|22126488\|ref\|NP_669911.1\| hypothetical protein y2607 [Yersinia pestis KIM], gi\|21959483\|gb\|AAM861... gi\|117673984 - gi\|117673984\|ref\|ZP_01497042.1\| hypothetical protein YpseI_02002197 [Yersinia pseudotuberculosis IP ...	146.0	[0..1]	[105..3]
YEEX_ECOLC - UPF0265 protein YeeX OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=yeeX PE=3 SV=1 YEEX_ECOLI - UPF0265 protein yeeX - Escherichia coli gi\|124530708, gi... - gi\|124530708\|ref\|ZP_01701265.1\| protein of unknown function DUF496 [Escherichia coli B], gi\|12449902... YEEX_ECOBW - UPF0265 protein YeeX OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=yeeX PE=3 SV=1 gi\|253773062, gi... - gi\|253773062\|ref\|YP_003035893.1\| protein of unknown function DUF496 [Escherichia coli BL21(DE3)], gi... sp\|B7UT45\|YEEX_ECO27 - UPF0265 protein yeeX OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yeeX PE=3 SV=1 gi\|254593117, gi... - gi\|254793717\|ref\|YP_003078554.1\| hypothetical protein ECSP_2680 [Escherichia coli O157:H7 str. TW143... gi\|226237414 - gi\|226237414\|dbj\|BAH46936.1\| conserved protein [Escherichia coli O55:H7] gi\|38704040 - gi\|38704040\|ref\|NP_310836.2\| hypothetical protein ECs2809 [Escherichia coli O157:H7 str. Sakai] YEEX_ECOL5 - UPF0265 protein YeeX OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=yeeX PE=3 SV=1 gi\|194428750, gi... - gi\|75210050\|ref\|ZP_00710233.1\| COG2926: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|188014430, gi... - gi\|188014430\|gb\|EDU52552.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... YEEX_SHIFL - UPF0265 protein YeeX OS=Shigella flexneri GN=yeeX PE=3 SV=1 gi\|192955215, gi... - gi\|75214973\|ref\|ZP_00713442.1\| COG2926: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|191167733, gi... - gi\|75229131\|ref\|ZP_00715706.1\| COG2926: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|189365847, gi... - gi\|189365847\|gb\|EDU84263.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|75242843, gi\|... - gi\|75242843\|ref\|ZP_00726549.1\| COG2926: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|189354759, gi... - gi\|189354759\|gb\|EDU73178.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|192931424, gi... - gi\|75259157\|ref\|ZP_00730505.1\| COG2926: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|168777106, gi... - gi\|187767600\|gb\|EDU31444.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|188492276, gi... - gi\|75514049\|ref\|ZP_00736379.1\| COG2926: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|189360763, gi... - gi\|189360763\|gb\|EDU79182.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... YEEX_ECO57 - UPF0265 protein YeeX OS=Escherichia coli O157:H7 GN=yeeX PE=3 SV=1 gi\|189370270, gi... - gi\|189370270\|gb\|EDU88686.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|188998759, gi... - gi\|188998759\|gb\|EDU67745.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... EG13391 - UPF0265 family protein / Function unknown, UPF0265 family EG13391 - UPF0265 family protein / Function unknown, UPF0265 family gi\|194431426, gi... - gi\|83571279\|ref\|ZP_00922720.1\| COG2926: Uncharacterized protein conserved in bacteria [Shigella dyse... gi\|83588009, gi\|... - gi\|83588009\|ref\|ZP_00926634.1\| COG2926: Uncharacterized protein conserved in bacteria [Escherichia c... YEEX_SHIB3 - UPF0265 protein YeeX OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=yeeX PE=3 SV=1 YEEX_ECOL6 - UPF0265 protein YeeX OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yeeX PE=3 SV=... YEEX_ECO24 - UPF0265 protein YeeX OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=yeeX PE=3 SV=1 YEEX_ECOL6 - UPF0265 protein yeeX OS=Escherichia coli O6 GN=yeeX PE=3 SV=1 YEEX_ECOHS - UPF0265 protein YeeX OS=Escherichia coli O9:H4 (strain HS) GN=yeeX PE=3 SV=1 gi\|217329702, gi... - gi\|217329702\|ref\|ZP_03445781.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... YEEX_ECO27 - UPF0265 protein YeeX OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yeeX PE=3 SV=1 YEEX_ECOSM - UPF0265 protein YeeX OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=yeeX PE=3 SV=1 gi\|189375957, gi... - gi\|189375957\|gb\|EDU94373.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|208810639, gi... - gi\|208810639\|ref\|ZP_03252515.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|195939523 - gi\|195939523\|ref\|ZP_03084905.1\| hypothetical protein EscherichcoliO157_24453 [Escherichia coli O157:... gi\|208741707, gi... - gi\|208821584\|ref\|ZP_03261904.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|208731167, gi... - gi\|208816824\|ref\|ZP_03257944.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... YEEX_ECOSE - UPF0265 protein YeeX OS=Escherichia coli (strain SE11) GN=yeeX PE=3 SV=1 YEEX_ECO5E - UPF0265 protein YeeX OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yeeX PE=3 SV=1	146.0	[0..4]	[105..3]
YEEX_SALPB - UPF0265 protein YeeX OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yeeX PE=3 SV=1 lcl\|NC_016856.1_... - [gene=yeeX] [protein=hypothetical protein] [protein_id=YP_005238089.1] [location=complement(2185200.... YEEX_SALTY - UPF0265 protein yeeX OS=Salmonella typhimurium GN=yeeX PE=3 SV=1 YEEX_SALTI - UPF0265 protein yeeX OS=Salmonella typhi GN=yeeX PE=3 SV=1 YEEX_SALAR - UPF0265 protein YeeX OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=yeeX PE=3... YEEX_SALCH - UPF0265 protein yeeX OS=Salmonella choleraesuis GN=yeeX PE=3 SV=1 YEEX_SALPA - UPF0265 protein yeeX OS=Salmonella paratyphi A GN=yeeX PE=3 SV=1 YEEX_SALPB - UPF0265 protein yeeX OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yeeX PE=3 SV=1 YEEX_SALTI - UPF0265 protein YeeX OS=Salmonella typhi GN=yeeX PE=3 SV=1 gi\|167553149, gi... - gi\|205322339\|gb\|EDZ10178.1\| protein YeeX [Salmonella enterica subsp. enterica serovar Saintpaul str.... gi\|167990968, gi... - gi\|205330563\|gb\|EDZ17327.1\| protein YeeX [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s... gi\|168229372, gi... - gi\|205335704\|gb\|EDZ22468.1\| protein YeeX [Salmonella enterica subsp. enterica serovar Kentucky str. ... gi\|197288424, gi... - gi\|197288424\|gb\|EDY27805.1\| protein YeeX [Salmonella enterica subsp. enterica serovar Schwarzengrund... gi\|204321734, gi... - gi\|204929190\|ref\|ZP_03220333.1\| protein YeeX [Salmonella enterica subsp. enterica serovar Javiana st... YEEX_SALG2 - UPF0265 protein YeeX OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=yeeX PE=3 SV=1 YEEX_SALEP - UPF0265 protein YeeX OS=Salmonella enteritidis PT4 (strain P125109) GN=yeeX PE=3 SV=1 gi\|213052545 - gi\|213052545\|ref\|ZP_03345423.1\| hypothetical protein Salmoneentericaenterica_06266 [Salmonella enter... YEEX_SALA4 - UPF0265 protein YeeX OS=Salmonella agona (strain SL483) GN=yeeX PE=3 SV=1 gi\|197263994, gi... - gi\|197263994\|ref\|ZP_03164068.1\| protein YeeX [Salmonella enterica subsp. enterica serovar Saintpaul ... YEEX_SALPK - UPF0265 protein YeeX OS=Salmonella paratyphi A (strain AKU_12601) GN=yeeX PE=3 SV=1 YEEX_SALCH - UPF0265 protein YeeX OS=Salmonella choleraesuis (strain SC-B67) GN=yeeX PE=3 SV=1 YEEX_SALDC - UPF0265 protein YeeX OS=Salmonella dublin (strain CT_02021853) GN=yeeX PE=3 SV=1 YEEX_SALNS - UPF0265 protein YeeX OS=Salmonella newport (strain SL254) GN=yeeX PE=3 SV=1 YEEX_SALTY - UPF0265 protein yeeX OS=Salmonella typhimurium GN=yeeX PE=3 SV=1 YEEX_SALHS - UPF0265 protein YeeX OS=Salmonella heidelberg (strain SL476) GN=yeeX PE=3 SV=1 gi\|194471602, gi... - gi\|194471602\|ref\|ZP_03077586.1\| protein YeeX [Salmonella enterica subsp. enterica serovar Kentucky s... YEEX_SALSV - UPF0265 protein YeeX OS=Salmonella schwarzengrund (strain CVM19633) GN=yeeX PE=3 SV=1 gi\|205338575, gi... - gi\|205338575\|gb\|EDZ25339.1\| protein YeeX [Salmonella enterica subsp. enterica serovar Heidelberg str... YEEX_SALCH - UPF0265 protein yeeX OS=Salmonella choleraesuis GN=yeeX PE=3 SV=1 gi\|205351286, gi... - gi\|205351286\|gb\|EDZ37917.1\| protein YeeX [Salmonella enterica subsp. enterica serovar Hadar str. RI_... gi\|195631277, gi... - gi\|195631277\|gb\|EDX49837.1\| protein YeeX [Salmonella enterica subsp. enterica serovar Newport str. S... gi\|168818254, gi... - gi\|205344921\|gb\|EDZ31685.1\| protein YeeX [Salmonella enterica subsp. enterica serovar Weltevreden st... gi\|16760991 - gi\|16760991\|ref\|NP_456608.1\| hypothetical protein STY2264 [Salmonella enterica subsp. enterica serov... YEEX_SALTY - UPF0265 protein YeeX OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yeeX PE=3 SV... gi\|29141313, gi\|... - gi\|29141313\|ref\|NP_804655.1\| hypothetical protein t0815 [Salmonella enterica subsp. enterica serovar... YEEX_SALPA - UPF0265 protein YeeX OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=yeeX PE=3 SV=1 gi\|213850290 - gi\|213850290\|ref\|ZP_03381188.1\| hypothetical protein SentesT_01390 [Salmonella enterica subsp. enter... gi\|238913459 - gi\|238913459\|ref\|ZP_04657296.1\| hypothetical protein SentesTe_20343 [Salmonella enterica subsp. ente... gi\|213974884 - gi\|213974884\|ref\|ZP_03402143.1\| hypothetical protein Salmonellaentericaenterica_10023 [Salmonella en... gi\|214001062 - gi\|214001062\|ref\|ZP_03411797.1\| hypothetical protein Salmonellentericaenterica_11210 [Salmonella ent... YEEX_SALPC - UPF0265 protein YeeX OS=Salmonella paratyphi C (strain RKS4594) GN=yeeX PE=3 SV=1 gi\|213419820 - gi\|213419820\|ref\|ZP_03352886.1\| hypothetical protein Salmonentericaenterica_19378 [Salmonella enteri... gi\|213425578 - gi\|213425578\|ref\|ZP_03358328.1\| hypothetical protein SentesTyphi_07935 [Salmonella enterica subsp. e... gi\|213612653 - gi\|213612653\|ref\|ZP_03370479.1\| hypothetical protein SentesTyp_09169 [Salmonella enterica subsp. ent... gi\|213650803 - gi\|213650803\|ref\|ZP_03380856.1\| hypothetical protein SentesTy_28396 [Salmonella enterica subsp. ente...	144.0	[0..4]	[105..3]
Y2843_PHOLL, YS4... - (Q7N376) Hypothetical UPF0265 protein plu2843, UPF0265 protein plu2843 OS=Photorhabdus luminescens s... Y2843_PHOLL - UPF0265 protein plu2843 OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 ...	144.0	[0..1]	[105..1]
YEEX_ESCFE - UPF0265 protein YeeX OS=Escherichia fergusonii GN=yeeX PE=3 SV=1	143.0	[0..4]	[105..3]
gi\|238793489, gi... - gi\|77978877\|ref\|ZP_00834301.1\| COG2926: Uncharacterized protein conserved in bacteria [Yersinia inte...	142.0	[0..1]	[105..1]
Y2560_PECAS - UPF0265 protein ECA2560 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=ECA2560 ... Y2560_ERWCT - UPF0265 protein ECA2560 OS=Erwinia carotovora subsp. atroseptica GN=ECA2560 PE=3 SV=1	141.0	[0..1]	[105..1]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNASKPTFQ DVLEFVRMFR RKNKLQREIV DNEKKIRDNQ KRVLLLDNLS EYIKPGMSIE  60
   61 EVQAIIANMR GDYEDRVDDY IIKNADLSKE RRELSKKLKA MGEVK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	64.60206
Match:	PF04363.3
Description:	No description for PF04363.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits