YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218553389, gi...
Organism:	Escherichia coli IAI1
Length:	88 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218553389, gi....

Description	E-value	Query Range	Subject Range
gi\|21242108, gi\|... - gi\|21242108\|ref\|NP_641690.1\| hypothetical protein XAC1355 [Xanthomonas axonopodis pv. citri str. 306...	119.0	[0..1]	[88..1]
gi\|56459865, gi\|... - gi\|56459865\|ref\|YP_155146.1\| hypothetical protein IL0756 [Idiomarina loihiensis L2TR], gi\|56178875\|g...	119.0	[0..1]	[88..1]
gi\|78035394, gi\|... - gi\|78046964\|ref\|YP_363139.1\| hypothetical protein XCV1408 [Xanthomonas campestris pv. vesicatoria st...	119.0	[0..1]	[88..1]
gi\|206708064, gi... - gi\|207856261\|ref\|YP_002242912.1\| hypothetical protein SEN0770 [Salmonella enterica subsp. enterica s... gi\|213023842 - gi\|213023842\|ref\|ZP_03338289.1\| hypothetical protein Salmonelentericaenterica_15402 [Salmonella ente... gi\|213163841 - gi\|213163841\|ref\|ZP_03349551.1\| hypothetical protein Salmoneentericaenterica_29056 [Salmonella enter... gi\|213417537 - gi\|213417537\|ref\|ZP_03350679.1\| hypothetical protein Salmonentericaenterica_06454 [Salmonella enteri... gi\|197362998, gi... - gi\|197362998\|ref\|YP_002142635.1\| hypothetical protein SSPA1797 [Salmonella enterica subsp. enterica ... gi\|198246191, gi... - gi\|198246191\|ref\|YP_002214788.1\| C4-type zinc finger protein, DksA/TraR family [Salmonella enterica ... gi\|204321055, gi... - gi\|204930061\|ref\|ZP_03221082.1\| C4-type zinc finger protein, DksA/TraR family [Salmonella enterica s... gi\|205352081, gi... - gi\|205352081\|ref\|YP_002225882.1\| hypothetical protein SG0803 [Salmonella enterica subsp. enterica se... gi\|205347676, gi... - gi\|205347676\|gb\|EDZ34307.1\| C4-type zinc finger protein, DksA/TraR family [Salmonella enterica subsp... gi\|168820026, gi... - gi\|205343244\|gb\|EDZ30008.1\| C4-type zinc finger protein, DksA/TraR family [Salmonella enterica subsp... gi\|194472273, gi... - gi\|194472273\|ref\|ZP_03078257.1\| C4-type zinc finger protein, DksA/TraR family [Salmonella enterica s... gi\|194735035, gi... - gi\|194735035\|ref\|YP_002113916.1\| C4-type zinc finger protein, DksA/TraR family [Salmonella enterica ... gi\|168230725, gi... - gi\|205334837\|gb\|EDZ21601.1\| C4-type zinc finger protein, DksA/TraR family [Salmonella enterica subsp... gi\|168236755, gi... - gi\|197290112\|gb\|EDY29469.1\| C4-type zinc finger protein, DksA/TraR family protein [Salmonella enteri... gi\|56128332, gi\|... - gi\|56414075\|ref\|YP_151150.1\| hypothetical protein SPA1928 [Salmonella enterica subsp. enterica serov... gi\|25324874, gi\|... - gi\|25324874\|pir\|\|AF0600 hypothetical Zinc-finger containing protein ybiI [imported] - Salmonella ent... gi\|29138114, gi\|... - gi\|29142483\|ref\|NP_805825.1\| hypothetical protein t2063 [Salmonella enterica subsp. enterica serovar... gi\|16759744 - gi\|16759744\|ref\|NP_455361.1\| hypothetical protein STY0862 [Salmonella enterica subsp. enterica serov... gi\|213424782 - gi\|213424782\|ref\|ZP_03357532.1\| hypothetical protein SentesTyphi_03156 [Salmonella enterica subsp. e... gi\|213649895 - gi\|213649895\|ref\|ZP_03379948.1\| hypothetical protein SentesTy_23046 [Salmonella enterica subsp. ente... gi\|213854567 - gi\|213854567\|ref\|ZP_03382807.1\| hypothetical protein SentesT_10809 [Salmonella enterica subsp. enter... gi\|213999281 - gi\|213999281\|ref\|ZP_03410016.1\| hypothetical protein Salmonellentericaenterica_00372 [Salmonella ent...	119.0	[0..1]	[88..1]
gi\|194449043, gi... - gi\|194449043\|ref\|YP_002044853.1\| hypothetical protein SeHA_C0952 [Salmonella enterica subsp. enteric... gi\|197240348, gi... - gi\|197262093\|ref\|ZP_03162167.1\| transcriptional regulator, TraR/DksA family [Salmonella enterica sub... gi\|168240691, gi... - gi\|205340360\|gb\|EDZ27124.1\| transcriptional regulator, TraR/DksA family [Salmonella enterica subsp. ... gi\|194443834, gi... - gi\|194443834\|ref\|YP_002040061.1\| transcriptional regulator, TraR/DksA family [Salmonella enterica su... gi\|167550484, gi... - gi\|205324526\|gb\|EDZ12365.1\| transcriptional regulator, TraR/DksA family [Salmonella enterica subsp. ... gi\|167992059, gi... - gi\|205329587\|gb\|EDZ16351.1\| transcriptional regulator, TraR/DksA family [Salmonella enterica subsp. ... gi\|16764187, gi\|... - gi\|16764187\|ref\|NP_459802.1\| hypothetical protein STM0825 [Salmonella typhimurium LT2], gi\|16419331\|... gi\|161614925, gi... - gi\|161614925\|ref\|YP_001588890.1\| hypothetical protein SPAB_02679 [Salmonella enterica subsp. enteric... gi\|238913892 - gi\|238913892\|ref\|ZP_04657729.1\| hypothetical protein SentesTe_22545 [Salmonella enterica subsp. ente... gi\|62179391, gi\|... - gi\|62179391\|ref\|YP_215808.1\| hypothetical protein SC0821 [Salmonella enterica subsp. enterica serova... gi\|224467164, gi... - gi\|224582637\|ref\|YP_002636435.1\| hypothetical Zinc-finger containing protein [Salmonella enterica su... lcl\|NC_016856.1_... - [gene=ybiI] [protein=hypothetical protein] [protein_id=YP_005236550.1] [location=complement(892059.....	117.0	[0..1]	[88..1]
gi\|84367381, gi\|... - gi\|84623441\|ref\|YP_450813.1\| hypothetical protein XOO_1784 [Xanthomonas oryzae pv. oryzae MAFF 31101... gi\|58426104, gi\|... - gi\|58581510\|ref\|YP_200526.1\| hypothetical protein XOO1887 [Xanthomonas oryzae pv. oryzae KACC10331],... gi\|188521700, gi... - gi\|188577248\|ref\|YP_001914177.1\| hypothetical protein PXO_01750 [Xanthomonas oryzae pv. oryzae PXO99...	116.0	[0..1]	[88..1]
gi\|188992393, gi... - gi\|188992393\|ref\|YP_001904403.1\| hypothetical protein xccb100_2998 [Xanthomonas campestris pv. campe... gi\|21230761, gi\|... - gi\|21230761\|ref\|NP_636678.1\| hypothetical protein XCC1304 [Xanthomonas campestris pv. campestris str... gi\|66574574, gi\|... - gi\|66769242\|ref\|YP_244004.1\| hypothetical protein XC_2936 [Xanthomonas campestris pv. campestris str...	115.0	[0..1]	[88..1]
gi\|9951143, gi\|1... - gi\|9951143\|gb\|AAG08255.1\|AE004900_9 conserved hypothetical protein [Pseudomonas aeruginosa PAO1], gi... gi\|11348252 - pir\|\|B83038 conserved hypothetical protein PA4870 [imported] - Pseudomonas aeruginosa (strain PAO1)	115.0	[0..1]	[88..1]
gi\|194418593, gi... - gi\|194433096\|ref\|ZP_03065378.1\| C4-type zinc finger protein, DksA/TraR family [Shigella dysenteriae ... gi\|227838986, gi... - gi\|227884234\|ref\|ZP_04002039.1\| DksA/TraR family C4 family zinc finger protein [Escherichia coli 839... gi\|75178407, gi\|... - gi\|75178407\|ref\|ZP_00698461.1\| COG1734: DnaK suppressor protein [Shigella boydii BS512], gi\|18773340... gi\|218357171, gi... - gi\|218549630\|ref\|YP_002383421.1\| hypothetical protein EFER_2305 [Escherichia fergusonii ATCC 35469],... gi\|226898447, gi... - gi\|237707237\|ref\|ZP_04537718.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|82776120, gi\|... - gi\|82776120\|ref\|YP_402467.1\| hypothetical protein SDY_0796 [Shigella dysenteriae Sd197], gi\|81240268... gi\|215263962, gi... - gi\|215485890\|ref\|YP_002328321.1\| hypothetical protein E2348C_0755 [Escherichia coli O127:H6 str. E23... gi\|81244659, gi\|... - gi\|82543248\|ref\|YP_407195.1\| hypothetical protein SBO_0691 [Shigella boydii Sb227], gi\|81244659\|gb\|A... gi\|91071411, gi\|... - gi\|91209837\|ref\|YP_539823.1\| hypothetical protein UTI89_C0806 [Escherichia coli UTI89], gi\|91071411\|... gi\|218426153, gi... - gi\|218688589\|ref\|YP_002396801.1\| hypothetical protein ECED1_0768 [Escherichia coli ED1a], gi\|2184261... gi\|218557708, gi... - gi\|218557708\|ref\|YP_002390621.1\| hypothetical protein ECS88_0821 [Escherichia coli S88], gi\|21836447... gi\|218704181, gi... - gi\|218704181\|ref\|YP_002411700.1\| hypothetical protein ECUMN_0947 [Escherichia coli UMN026], gi\|21843... gi\|26107177, gi\|... - gi\|26246778\|ref\|NP_752818.1\| hypothetical protein c0888 [Escherichia coli CFT073], gi\|26107177\|gb\|AA... gi\|218699176, gi... - gi\|218699176\|ref\|YP_002406805.1\| hypothetical protein ECIAI39_0780 [Escherichia coli IAI39], gi\|2183...	114.0	[0..1]	[88..1]
gi\|194428212, gi... - gi\|75210603\|ref\|ZP_00710751.1\| COG1734: DnaK suppressor protein [Escherichia coli B171], gi\|19442821...	114.0	[0..1]	[88..1]

Back

Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGWANDDA VNEQINSTIE DAIARARGEI PRGESLDECE ECGAPIPQAR REAIPGVRLC  60
   61 IHCQQEKDLQ KPAYTGYNRR GSKDSQLR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.39794
Match:	1tjlA
Description:	Crystal structure of transcription factor DksA from E. coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits