YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|170083759, gi...
Organism:	Escherichia coli str. K-12 substr. DH10B
Length:	225 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|170083759, gi....

Description	E-value	Query Range	Subject Range
gi\|90411096, gi\|... - gi\|90411096\|ref\|ZP_01219109.1\| putative haloacid dehalogenase-like hydrolase family protein [Photoba...	177.0	[0..1]	[225..1]
gi\|121548298, gi... - gi\|121587463\|ref\|ZP_01677231.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215482... gi\|153219982, gi... - gi\|153219982\|ref\|ZP_01951551.1\| HAD superfamily (subfamily IA) hydrolase [Vibrio cholerae MAK 757], ... gi\|254845473, gi... - gi\|75831517\|ref\|ZP_00760780.1\| COG1011: Predicted hydrolase (HAD superfamily) [Vibrio cholerae MO10]... gi\|153817935, gi... - gi\|153817935\|ref\|ZP_01970602.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12651... gi\|227119882, gi... - gi\|75825433\|ref\|ZP_00754869.1\| COG1011: Predicted hydrolase (HAD superfamily) [Vibrio cholerae O395]... gi\|121631657, gi... - gi\|75817215\|ref\|ZP_00747668.1\| COG1011: Predicted hydrolase (HAD superfamily) [Vibrio cholerae V52],... gi\|11354800 - pir\|\|D82438 conserved hypothetical protein VCA0608 [imported] - Vibrio cholerae (strain N16961 serog... gi\|149741955, gi... - gi\|153824401\|ref\|ZP_01977068.1\| conserved hypothetical protein [Vibrio cholerae MZO-2], gi\|149741955... gi\|15601366, gi\|... - gi\|9658020\|gb\|AAF96509.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar eltor str. N1696... gi\|227812175, gi... - gi\|227812175\|ref\|YP_002812185.1\| hypothetical protein VCM66_A0566 [Vibrio cholerae M66-2], gi\|227011... gi\|229506223, gi... - gi\|229506223\|ref\|ZP_04395732.1\| 5'-nucleotidase YjjG [Vibrio cholerae BX 330286], gi\|229356574\|gb\|EE... gi\|229352363, gi... - gi\|229509918\|ref\|ZP_04399398.1\| 5'-nucleotidase YjjG [Vibrio cholerae B33], gi\|229352363\|gb\|EEO17303... gi\|229346402, gi... - gi\|229516521\|ref\|ZP_04405968.1\| 5'-nucleotidase YjjG [Vibrio cholerae RC9], gi\|229346402\|gb\|EEO11373... gi\|229605763, gi... - gi\|229605763\|ref\|YP_002876467.1\| 5'-nucleotidase YjjG [Vibrio cholerae MJ-1236], gi\|229372249\|gb\|ACQ...	176.0	[0..1]	[222..1]
gi\|91191157, gi\|... - gi\|91224246\|ref\|ZP_01259509.1\| nucleotidase [Vibrio alginolyticus 12G01], gi\|91191157\|gb\|EAS77423.1\|... gi\|28900072, gi\|... - gi\|28900072\|ref\|NP_799727.1\| nucleotidase [Vibrio parahaemolyticus RIMD 2210633], gi\|28808355\|dbj\|BA... gi\|28808355 - gi\|28808355\|dbj\|BAC61560.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]	176.0	[0..1]	[222..1]
gi\|89049412, gi\|... - gi\|89074837\|ref\|ZP_01161291.1\| nucleotidase [Photobacterium sp. SKA34], gi\|89049412\|gb\|EAR54974.1\| n...	176.0	[0..1]	[223..1]
gi\|194468523, gi... - gi\|194468523\|ref\|ZP_03074507.1\| 5-nucleotidase YjjG [Salmonella enterica subsp. enterica serovar Ken... gi\|194449902, gi... - gi\|194449902\|ref\|YP_002048579.1\| nucleotidase [Salmonella enterica subsp. enterica serovar Heidelber... gi\|194402512, gi... - gi\|194443849\|ref\|YP_002043800.1\| 5-nucleotidase YjjG [Salmonella enterica subsp. enterica serovar Ne... gi\|39546407 - gi\|39546407\|ref\|NP_463415.2\| nucleotidase [Salmonella typhimurium LT2] lcl\|NC_016856.1_... - [gene=yjjG] [protein=nucleotidase] [protein_id=YP_005240901.1] [location=4825952..4826629] gi\|207859685, gi... - gi\|207859685\|ref\|YP_002246336.1\| nucleotidase [Salmonella enterica subsp. enterica serovar Enteritid... gi\|205360036, gi... - gi\|205360036\|ref\|ZP_02834100.2\| 5-nucleotidase YjjG [Salmonella enterica subsp. enterica serovar Wel... gi\|205359371, gi... - gi\|205359371\|ref\|ZP_02669478.2\| 5-nucleotidase YjjG [Salmonella enterica subsp. enterica serovar Hei... gi\|205358320, gi... - gi\|205358320\|ref\|ZP_02655261.2\| 5-nucleotidase YjjG [Salmonella enterica subsp. enterica serovar Ken... gi\|205357522, gi... - gi\|205357522\|ref\|ZP_02570898.2\| 5-nucleotidase YjjG [Salmonella enterica subsp. enterica serovar 4,[... gi\|204323685, gi... - gi\|204927020\|ref\|ZP_03218222.1\| 5-nucleotidase YjjG [Salmonella enterica subsp. enterica serovar Jav... gi\|200387752, gi... - gi\|200387752\|ref\|ZP_03214364.1\| 5-nucleotidase YjjG [Salmonella enterica subsp. enterica serovar Vir... gi\|198242931, gi... - gi\|198242931\|ref\|YP_002218433.1\| 5-nucleotidase YjjG [Salmonella enterica subsp. enterica serovar Du... gi\|197300661, gi... - gi\|197300661\|ref\|ZP_02659751.2\| 5-nucleotidase YjjG [Salmonella enterica subsp. enterica serovar Sch... gi\|197239981, gi... - gi\|197261726\|ref\|ZP_03161800.1\| 5-nucleotidase YjjG [Salmonella enterica subsp. enterica serovar Sai... gi\|197212788, gi... - gi\|197249085\|ref\|YP_002149500.1\| 5-nucleotidase YjjG [Salmonella enterica subsp. enterica serovar Ag... gi\|194734990, gi... - gi\|194734990\|ref\|YP_002117473.1\| 5-nucleotidase YjjG [Salmonella enterica subsp. enterica serovar Sc...	175.0	[0..1]	[225..1]
gi\|116185383, gi... - gi\|75856031\|ref\|ZP_00763667.1\| COG1011: Predicted hydrolase (HAD superfamily) [Vibrio sp. Ex25], gi\|...	175.0	[0..1]	[222..14]
gi\|81243772, gi\|... - gi\|82779624\|ref\|YP_405973.1\| nucleotidase [Shigella dysenteriae Sd197], gi\|81243772\|gb\|ABB64482.1\| p...	175.0	[0..1]	[225..1]
gi\|117626686, gi... - gi\|117626686\|ref\|YP_860009.1\| nucleotidase [Escherichia coli APEC O1], gi\|115515810\|gb\|ABJ03885.1\| c... gi\|218359165, gi... - gi\|218551623\|ref\|YP_002385415.1\| nucleotidase [Escherichia fergusonii ATCC 35469], gi\|218359165\|emb\|... gi\|215267757, gi... - gi\|215489685\|ref\|YP_002332116.1\| nucleotidase [Escherichia coli O127:H6 str. E2348/69], gi\|215267757... gi\|218698210, gi... - gi\|218698210\|ref\|YP_002405877.1\| nucleotidase [Escherichia coli 55989], gi\|218354942\|emb\|CAV02166.1\|... gi\|75515564, gi\|... - gi\|75515564\|ref\|ZP_00737721.1\| COG1011: Predicted hydrolase (HAD superfamily) [Escherichia coli 5363... gi\|218430325, gi... - gi\|218692761\|ref\|YP_002400973.1\| nucleotidase [Escherichia coli ED1a], gi\|218430325\|emb\|CAV18205.1\| ... gi\|227885140, gi... - gi\|227885140\|ref\|ZP_04002945.1\| nucleotidase [Escherichia coli 83972], gi\|227837969\|gb\|EEJ48435.1\| n... gi\|75236060, gi\|... - gi\|75236060\|ref\|ZP_00720186.1\| COG1011: Predicted hydrolase (HAD superfamily) [Escherichia coli F11]... gi\|218708051, gi... - gi\|218708051\|ref\|YP_002415570.1\| nucleotidase [Escherichia coli UMN026], gi\|218435148\|emb\|CAR16106.1... gi\|75229433, gi\|... - gi\|75229433\|ref\|ZP_00715983.1\| COG1011: Predicted hydrolase (HAD superfamily) [Escherichia coli B7A]... gi\|218703066, gi... - gi\|218703066\|ref\|YP_002410695.1\| nucleotidase [Escherichia coli IAI39], gi\|218373052\|emb\|CAR20942.1\|... gi\|170683179, gi... - gi\|170683179\|ref\|YP_001746828.1\| 5-nucleotidase YjjG [Escherichia coli SMS-3-5], gi\|170520897\|gb\|ACB... gi\|26251260, gi\|... - gi\|26251260\|ref\|NP_757300.1\| nucleotidase [Escherichia coli CFT073], gi\|26111693\|gb\|AAN83874.1\|AE016... gi\|91214028, gi\|... - gi\|91214028\|ref\|YP_544014.1\| nucleotidase [Escherichia coli UTI89], gi\|91075602\|gb\|ABE10483.1\| hypot... gi\|110346402, gi... - gi\|110644810\|ref\|YP_672540.1\| nucleotidase [Escherichia coli 536], gi\|110346402\|gb\|ABG72639.1\| hypot...	175.0	[0..1]	[225..1]
gi\|197365256, gi... - gi\|197365256\|ref\|YP_002144893.1\| nucleotidase [Salmonella enterica subsp. enterica serovar Paratyphi... gi\|56130590, gi\|... - gi\|56416333\|ref\|YP_153408.1\| nucleotidase [Salmonella enterica subsp. enterica serovar Paratyphi A s...	175.0	[0..1]	[225..2]

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Predicted Domain #1

Region A:
Residues: [1-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWDWIFFDA DETLFTFDSF TGLQRMFLDY SVTFTAEDFQ DYQAVNKPLW VDYQNGAITS  60
   61 LQLQHGRFES WAERLNVEPG KLNEAFINAM AEICTPLPGA VSLLNAIRGN AKIGIITNGF 120
  121 SALQQVRLER TGLRDYFDLL VISEEVGVAK PNKKIFDYAL EQAGNPDRSR VLMVGDTAES 180
  181 DILGGINAGL ATCWLNAHHR EQPEGIAPTW TVSSLHELEQ LLCKH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.154902
Match:	2hszA
Description:	No description for 2hszA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.55296860681783	bayes_pls_golite062009
N-acylneuraminate-9-phosphatase activity	0.971134270518015	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: