YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|208724828, gi...
Organism:	Escherichia coli O157:H7 str. EC4206
Length:	338 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|208724828, gi....

Description	E-value	Query Range	Subject Range
gi\|81240934, gi\|... - gi\|82776786\|ref\|YP_403135.1\| cytoplasmic asparaginase I [Shigella dysenteriae Sd197], gi\|81240934\|gb...	462.0	[0..1]	[338..1]
gi\|24051772, gi\|... - gi\|24112836\|ref\|NP_707346.1\| cytoplasmic asparaginase I [Shigella flexneri 2a str. 301], gi\|24051772... gi\|30062970, gi\|... - gi\|30062970\|ref\|NP_837141.1\| cytoplasmic asparaginase I [Shigella flexneri 2a str. 2457T], gi\|300412...	461.0	[0..1]	[338..1]
gi\|187428127, gi... - gi\|75177305\|ref\|ZP_00697394.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit...	461.0	[0..1]	[338..1]
gi\|82543828, gi\|... - gi\|82543828\|ref\|YP_407775.1\| cytoplasmic asparaginase I [Shigella boydii Sb227], gi\|81245239\|gb\|ABB6...	460.0	[0..1]	[338..1]
gi\|115513062, gi... - gi\|117623938\|ref\|YP_852851.1\| cytoplasmic asparaginase I [Escherichia coli APEC O1], gi\|115513062\|gb... gi\|218365404, gi... - gi\|218558635\|ref\|YP_002391548.1\| cytoplasmic asparaginase I [Escherichia coli S88], gi\|218365404\|emb... gi\|91072558, gi\|... - gi\|91210984\|ref\|YP_540970.1\| cytoplasmic asparaginase I [Escherichia coli UTI89], gi\|91072558\|gb\|ABE... gi\|226900475, gi... - gi\|237705718\|ref\|ZP_04536199.1\| cytoplasmic asparaginase I [Escherichia sp. 3_2_53FAA], gi\|226900475...	460.0	[0..1]	[338..1]
gi\|75513737, gi\|... - gi\|75513737\|ref\|ZP_00736113.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|157161229, gi... - gi\|75195835\|ref\|ZP_00705905.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit...	460.0	[0..1]	[338..1]
gi\|110343481, gi... - gi\|110641889\|ref\|YP_669619.1\| cytoplasmic asparaginase I [Escherichia coli 536], gi\|110343481\|gb\|ABG... gi\|75241358, gi\|... - gi\|75241358\|ref\|ZP_00725209.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|227885805, gi... - gi\|227885805\|ref\|ZP_04003610.1\| cytoplasmic asparaginase I [Escherichia coli 83972], gi\|227837378\|gb... gi\|26248025, gi\|... - gi\|26248025\|ref\|NP_754065.1\| cytoplasmic asparaginase I [Escherichia coli CFT073], gi\|26108428\|gb\|AA... gi\|218689708, gi... - gi\|218689708\|ref\|YP_002397920.1\| cytoplasmic asparaginase I [Escherichia coli ED1a], gi\|218427272\|em...	459.0	[0..1]	[338..1]
gi\|25330464 - gi\|25330464\|pir\|\|F85786 asparaginase (EC 3.5.1.1) I, cytoplasmic [imported] - Escherichia coli (stra... gi\|12515793, gi\|... - gi\|15802179\|ref\|NP_288201.1\| cytoplasmic asparaginase I [Escherichia coli O157:H7 EDL933], gi\|125157...	458.0	[0..1]	[338..1]
gi\|167552355, gi... - gi\|205322964\|gb\|EDZ10803.1\| L-asparaginase 1 [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|167991891, gi... - gi\|205329738\|gb\|EDZ16502.1\| L-asparaginase 1 [Salmonella enterica subsp. enterica serovar 4,[5],12:i... gi\|16419811, gi\|... - gi\|16764645\|ref\|NP_460260.1\| cytoplasmic asparaginase I [Salmonella typhimurium LT2], gi\|16419811\|gb... gi\|161363668, gi... - gi\|161614304\|ref\|YP_001588270.1\| cytoplasmic asparaginase I [Salmonella enterica subsp. enterica ser... gi\|194712595, gi... - gi\|194737093\|ref\|YP_002114311.1\| L-asparaginase 1 [Salmonella enterica subsp. enterica serovar Schwa... lcl\|NC_016856.1_... - [gene=ansA] [protein=asparaginase] [protein_id=YP_005237146.1] [location=complement(1381774..1382790... gi\|205332679, gi... - gi\|205332679\|gb\|EDZ19443.1\| L-asparaginase 1 [Salmonella enterica subsp. enterica serovar Kentucky s... gi\|168238959, gi... - gi\|197288240\|gb\|EDY27625.1\| L-asparaginase 1 [Salmonella enterica subsp. enterica serovar Schwarzeng...	452.0	[0..1]	[338..1]
gi\|29137267, gi\|... - gi\|29141639\|ref\|NP_804981.1\| cytoplasmic asparaginase I [Salmonella enterica subsp. enterica serovar... gi\|16760601 - gi\|16760601\|ref\|NP_456218.1\| cytoplasmic asparaginase I [Salmonella enterica subsp. enterica serovar... gi\|213419839 - gi\|213419839\|ref\|ZP_03352905.1\| cytoplasmic asparaginase I [Salmonella enterica subsp. enterica sero... gi\|16502897, gi\|... - gi\|25330459\|pir\|\|AC0711 asparaginase (EC 3.5.1.1) - Salmonella enterica subsp. enterica serovar Typh... gi\|213427776 - gi\|213427776\|ref\|ZP_03360526.1\| cytoplasmic asparaginase I [Salmonella enterica subsp. enterica sero... gi\|213647252 - gi\|213647252\|ref\|ZP_03377305.1\| cytoplasmic asparaginase I [Salmonella enterica subsp. enterica sero... gi\|213850390 - gi\|213850390\|ref\|ZP_03381288.1\| cytoplasmic asparaginase I [Salmonella enterica subsp. enterica sero... gi\|214003049 - gi\|214003049\|ref\|ZP_03413784.1\| cytoplasmic asparaginase I [Salmonella enterica subsp. enterica sero...	452.0	[0..1]	[338..1]

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Predicted Domain #1

Region A:
Residues: [1-338]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKKSIYVAY TGGTIGMQRS EQGYIPVSGH LQRQLALMPE FHRPEMPDFT IHEYTPLMDS  60
   61 SDMTPEDWQH IAEDIKAHYD DYDGFVILHG TDTMAYTASA LSFMLENLGK PVIVTGSQIP 120
  121 LAELRSDGQI NLLNALYVAA NYPINEVTLF FNNRLYRGNR TTKAHADGFD AFASPNLPPL 180
  181 LEAGIHIRRL NTPPAPHGEG ELIVHPITPQ PIGVVTIYPG ISADVVRNFL RQPVKALILR 240
  241 SYGVGNAPQN KAFLQELQEA SDRGIVVVNL TQCMSGKVNM GGYATGNALA HAGVIGGADM 300
  301 TVEATLTKLH YLLSQELDTE TIRKAMSQNL RGELTPDD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	131.0
Match:	2p2dA
Description:	No description for 2p2dA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits