YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167426711, gi...
Organism:	Yersinia pestis biovar Mediaevalis str. K1973002
Length:	239 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167426711, gi....

Description	E-value	Query Range	Subject Range
gi\|186699683, gi... - gi\|186896657\|ref\|YP_001873769.1\| tRNA (guanine-N(7)-)-methyltransferase [Yersinia pseudotuberculosis... TRMB_YERP3 - tRNA (guanine-N(7)-)-methyltransferase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758...	1.0E-46	[1..239]	[1..239]
gi\|170023070, gi... - gi\|170023070\|ref\|YP_001719575.1\| tRNA (guanine-N(7)-)-methyltransferase [Yersinia pseudotuberculosis... TRMB_YERPS - tRNA (guanine-N(7)-)-methyltransferase OS=Yersinia pseudotuberculosis GN=trmB PE=3 SV=1 TRMB_YERPS - tRNA (guanine-N(7)-)-methyltransferase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN...	1.0E-46	[1..239]	[1..239]
gi\|77961509, gi\|... - gi\|77961509\|ref\|ZP_00825345.1\| COG0220: Predicted S-adenosylmethionine-dependent methyltransferase [...	2.0E-46	[1..239]	[1..239]
gi\|77974451 - gi\|77974451\|ref\|ZP_00829991.1\| COG0220: Predicted S-adenosylmethionine-dependent methyltransferase [...	2.0E-46	[1..239]	[14..252]
gi\|77976486 - gi\|77976486\|ref\|ZP_00831972.1\| COG0220: Predicted S-adenosylmethionine-dependent methyltransferase [...	3.0E-46	[1..239]	[14..252]
gi\|77956386 - gi\|77956386\|ref\|ZP_00820489.1\| COG0220: Predicted S-adenosylmethionine-dependent methyltransferase [...	5.0E-46	[1..239]	[1..239]
gi\|112702911 - gi\|112702911\|emb\|CAL34130.1\| hypothetical protein [Enterobacter sakazakii]	4.0E-45	[1..239]	[33..271]
lcl\|NC_016856.1_... - [gene=trmB] [protein=tRNA (guanine-N(7))-methyltransferase] [protein_id=YP_005239256.1] [location=co... TRMB_SALTY - tRNA (guanine-N(7)-)-methyltransferase OS=Salmonella typhimurium GN=trmB PE=3 SV=1 TRMB_SALTY - tRNA (guanine-N(7)-)-methyltransferase OS=Salmonella typhimurium GN=trmB PE=3 SV=1 TRMB_SALTY - tRNA (guanine-N(7)-)-methyltransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 70072...	2.0E-43	[1..239]	[1..239]
gi\|213162850 - gi\|213162850\|ref\|ZP_03348560.1\| tRNA (guanine-N(7))-methyltransferase [Salmonella enterica subsp. en... gi\|29143372, gi\|... - gi\|29143372\|ref\|NP_806714.1\| tRNA (guanine-N(7))-methyltransferase [Salmonella enterica subsp. enter... gi\|213425493 - gi\|213425493\|ref\|ZP_03358243.1\| tRNA (guanine-N(7))-methyltransferase [Salmonella enterica subsp. en... gi\|16761885 - gi\|16761885\|ref\|NP_457502.1\| tRNA (guanine-N(7))-methyltransferase [Salmonella enterica subsp. enter... gi\|213579925 - gi\|213579925\|ref\|ZP_03361751.1\| tRNA (guanine-N(7))-methyltransferase [Salmonella enterica subsp. en... TRMB_SALTI - tRNA (guanine-N(7)-)-methyltransferase OS=Salmonella typhi GN=trmB PE=3 SV=1 gi\|213646176 - gi\|213646176\|ref\|ZP_03376229.1\| tRNA (guanine-N(7))-methyltransferase [Salmonella enterica subsp. en... TRMB_SALTI - tRNA (guanine-N(7)-)-methyltransferase OS=Salmonella typhi GN=trmB PE=3 SV=1 gi\|213850186 - gi\|213850186\|ref\|ZP_03381084.1\| tRNA (guanine-N(7))-methyltransferase [Salmonella enterica subsp. en... gi\|214000588 - gi\|214000588\|ref\|ZP_03411323.1\| tRNA (guanine-N(7))-methyltransferase [Salmonella enterica subsp. en...	3.0E-43	[1..239]	[1..239]
gi\|206710173, gi... - gi\|207858370\|ref\|YP_002245021.1\| tRNA (guanine-N(7)-)-methyltransferase [Salmonella enterica subsp. ... gi\|194712774, gi... - gi\|194737272\|ref\|YP_002116057.1\| tRNA (guanine-N(7)-)-methyltransferase [Salmonella enterica subsp. ... gi\|194444176, gi... - gi\|194444176\|ref\|YP_002042369.1\| tRNA (guanine-N(7)-)-methyltransferase [Salmonella enterica subsp. ... gi\|195633286, gi... - gi\|195633286\|gb\|EDX51700.1\| tRNA (guanine-N(7)-)-methyltransferase [Salmonella enterica subsp. enter... gi\|167551998, gi... - gi\|205323380\|gb\|EDZ11219.1\| tRNA (guanine-N(7)-)-methyltransferase [Salmonella enterica subsp. enter... TRMB_SALCH - tRNA (guanine-N(7)-)-methyltransferase OS=Salmonella choleraesuis (strain SC-B67) GN=trmB PE=3 SV=1 TRMB_SALCH - tRNA (guanine-N(7)-)-methyltransferase OS=Salmonella choleraesuis GN=trmB PE=3 SV=1 TRMB_SALCH - tRNA (guanine-N(7)-)-methyltransferase OS=Salmonella choleraesuis GN=trmB PE=3 SV=1	3.0E-43	[1..239]	[1..239]

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Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINDVISPEF DENGRALRRI RSFVRRQGRL TKGQQLALDS YWPVMGVEYQ AAPVDLNTLF  60
   61 GREAPIVLEI GFGMGTSLVT MATNNPQQNF LGIEVHSPGV GACLSSAHDA GLSNLRIMCH 120
  121 DAVEVLENMI PEASLDMVQL FFPDPWHKAR HNKRRIVQTP FVELVKSKLK VGGVFHMATD 180
  181 WQPYAEHMLE VMSGVSGYLN LSEQNDYVPR PDSRPLTKFE LRGQRLGHGV WDLMFERKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.0
Match:	1yzhA
Description:	Crystal Structure of the Conserved Hypothetical Protein, Methyltransferase from Streptococcus pneumoniae TIGR4
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methyltransferase activity	3.57681394097837	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	3.49392219433935	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	3.39429041855776	bayes_pls_golite062009
RNA methyltransferase activity	3.07428840534971	bayes_pls_golite062009
rRNA methyltransferase activity	2.29640050660273	bayes_pls_golite062009
transferase activity	2.22303238506686	bayes_pls_golite062009
tRNA methyltransferase activity	1.95598912777096	bayes_pls_golite062009
catalytic activity	1.25333584501255	bayes_pls_golite062009
N-methyltransferase activity	0.548554528454085	bayes_pls_golite062009
rRNA (adenine) methyltransferase activity	0.533090627724779	bayes_pls_golite062009
rRNA (adenine-N6,N6-)-dimethyltransferase activity	0.455449410561251	bayes_pls_golite062009
tRNA (guanine) methyltransferase activity	0.203168546434167	bayes_pls_golite062009
protein methyltransferase activity	0.0313727777808413	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: