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View Structure Prediction Details

Protein: gi|45773788, gi|...
Organism: Arabidopsis thaliana
Length: 213 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|45773788, gi|....

Description E-value Query
Range
Subject
Range
gi|50756309 - gi|50756309|ref|XP_415105.1| PREDICTED: similar to polyubiquitin with 3 Ub domains [Gallus gallus]
274.0 [0..1] [188..206]

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Predicted Domain #1
Region A:
Residues: [1-213]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVADVALSP IHRGSAFAVG GFGQSTTTHY SVKSVLVFLS VSGSTMPMLI LESDSIAEVK  60
   61 LRIQTCNGFR VRRQKLVFSG RELARNASRV KDYGVTGGSV LHLVLKLYDP LLVTVITTCG 120
  121 KVFQFHVDRR RNVGYLKKRI SKEGKGFPEV DDQEILFKGE KLDDNRIIDG ICKDGNSVIH 180
  181 LLVKKSVEDT VKREEDTATG KDSLLEPLFL TPM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.522879
Match: 1z2mA
Description: Crystal Structure of ISG15, the Interferon-Induced Ubiquitin Cross Reactive Protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.0934358341245259 bayes_pls_golite062009
protein binding 0.03789551947602 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle