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View Structure Prediction Details

Protein: RPB9A_ARATH
Organism: Arabidopsis thaliana
Length: 114 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPB9A_ARATH.

Description E-value Query
Range
Subject
Range
gi|50797497 - gi|50797497|ref|XP_423952.1| PREDICTED: similar to DNA-directed RNA polymerase II 14.5 kDa polypepti...
137.0 [0..4] [114..92]

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Predicted Domain #1
Region A:
Residues: [1-114]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTMKFCREC NNILYPKEDK EQKILLYACR NCDHQEVADN SCVYRNEVHH SVSERTQILT  60
   61 DVASDPTLPR TKAVRCSKCQ HREAVFFQAT ARGEEGMTLF FVCCNPNCGH RWRE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.69897
Match: 1i3qI
Description: RBP9 subunit of RNA polymerase II
Matching Structure (courtesy of the PDB):

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Created and Maintained by: Michael Riffle