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View Structure Prediction Details

Protein: NIFU3_ARATH
Organism: Arabidopsis thaliana
Length: 236 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NIFU3_ARATH.

Description E-value Query
Range
Subject
Range
gi|21554503 - gi|21554503|gb|AAM63593.1| nitrogen fixation like protein [Arabidopsis thaliana]
288.0 [0..1] [236..1]

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Predicted Domain #1
Region A:
Residues: [1-158]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSVSGQTRI TTMNLSLSTA EKNPNFRSSL LNSKNAISDT LGVSSKCSTF LRGQFQRIHF  60
   61 SWLQHTRPLR KRTVFGHVSC VMPLTEENVE RVLDEVRPSL MADGGNVALH EIDGLVVVLK 120
  121 LQGACGSCPS SSMTLKMGIE SRLRDKIPEI MSVEQFLE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.0
Match: 1xhjA
Description: Solution Structure Of The Staphylococcus Epidermidis Protein SE0630. Northest Structural Genomics Consortium Target SeR8.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
2 iron, 2 sulfur cluster binding 0.32141857574864 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [159-236]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SETGGLELND ENIEKVLSEL RPYLSGTGGG GLELVEIDGY VVKVRLTGPA AGVMTVRVAL  60
   61 TQKLRETIPS IGAVQLLE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.69897
Match: 1th5A
Description: Solution structure of C-terminal domain of NifU-like protein from Oryza sativa
Matching Structure (courtesy of the PDB):

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