YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24159087
Organism:	Homo sapiens
Length:	82 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24159087.

Description	E-value	Query Range	Subject Range
gi\|11119241 - gi\|11119241\|gb\|AAG30576.1\|AF314093_1 nitrate reductase [Ricinus communis]	112.0	[0..2]	[82..532]
gi\|70986446, gi\|... - gi\|70986446\|ref\|XP_748717.1\| cytochrome b5 reductase [Aspergillus fumigatus Af293], gi\|66846346\|gb\|E...	111.0	[0..4]	[82..20]
NIA2_SOYBN - Inducible nitrate reductase [NADH] 2 OS=Glycine max GN=INR2 PE=2 SV=1	110.0	[0..2]	[82..515]
NIA_BETPN - Nitrate reductase [NAD(P)H] OS=Betula pendula GN=NIA1 PE=2 SV=1	109.0	[0..2]	[82..526]
gi\|114187560, gi... - gi\|115449455\|ref\|XP_001218611.1\| cytochrome b5 [Aspergillus terreus NIH2624], gi\|114187560\|gb\|EAU292...	109.0	[0..4]	[82..1]
gi\|76640228 - gi\|76640228\|ref\|XP_582806.2\| PREDICTED: cytochrome b5 type B (outer mitochondrial membrane) [Bos tau...	108.0	[0..1]	[82..108]
NIA_LOTJA - Nitrate reductase [NADH] OS=Lotus japonicus GN=NIA PE=3 SV=1	108.0	[0..4]	[82..521]

Back

Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QESTHIYTKE EVSSHTSPET GIWVTLGSEV FDVTEFVDLH PGGPSKLMLA AGGPLEPFWA  60
   61 LYAVHNQSHV RELLAQYKIG EL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.39794
Match:	1mj4A
Description:	Sulfite oxidase, N-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits