YRC Public Data Repository - Protein Structure Prediction

Protein:	YIPF5_PONAB
Organism:	Pongo abelii
Length:	257 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YIPF5_PONAB.

Description	E-value	Query Range	Subject Range
YIPF5_MACFA - Protein YIPF5 OS=Macaca fascicularis GN=YIPF5 PE=2 SV=1 CCDS4279.1_1 - null gi\|109079155, gi... - gi\|109079159\|ref\|XP_001098831.1\| PREDICTED: similar to smooth muscle cell associated protein 5 isofo...	3.0E-84	[1..257]	[1..257]
gi\|115371747, gi... - gi\|116175279\|ref\|NP_001070693.1\| Yip1 domain family, member 5 [Sus scrofa], gi\|115371747\|gb\|ABI96198...	8.0E-84	[1..257]	[1..257]
gi\|57042739 - gi\|57042739\|ref\|XP_535226.1\| PREDICTED: similar to smooth muscle cell associated protein 5 [Canis fa...	1.0E-83	[1..257]	[1..257]
gi\|62898762 - gi\|62898762\|dbj\|BAD97235.1\| golgi membrane protein SB140 variant [Homo sapiens]	1.0E-83	[1..257]	[1..257]
YIPF5_BOVIN - Protein YIPF5 OS=Bos taurus GN=YIPF5 PE=2 SV=1	2.0E-79	[1..257]	[1..257]
YIPF5_XENTR - Protein YIPF5 OS=Xenopus tropicalis GN=yipf5 PE=2 SV=1	3.0E-79	[1..257]	[1..256]
YIPF5_XENLA - Protein YIPF5 OS=Xenopus laevis GN=yipf5 PE=2 SV=1	3.0E-78	[1..257]	[1..256]
gi\|114602513 - gi\|114602513\|ref\|XP_001155689.1\| PREDICTED: smooth muscle cell associated protein 5 isoform 2 [Pan t...	8.0E-78	[1..241]	[1..241]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGFENLNTD FYQTSYSIDD QSQQSYDYGG SGGPYSKQYA GYDYSQQGRF VPPDMMQPQQ  60
   61 PYTGQIYQPT QAYTPASPQP FY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.11
Match:	1qd7B
Description:	30S subunit
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [83-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNNFEDEPPL LEELGINFDH IWQKTLTVLH PLKVADGSIM NETDLAGPMV FCLAFGATLL  60
   61 LAGKIQFGYV YGISAIGCLG MFCLLNLMSM TGVSFGCVAS VLGYCLLPMI LLSSFAVIFS 120
  121 LQGMVGIILT AGIIGWCSFS ASKIFISALA MEGQQLLVAY PCALLYGVFA LISVF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	52.568636
Match:	PF04893.8
Description:	No description for PF04893.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits