YRC Public Data Repository - Protein Structure Prediction

Protein:	YEEX_SALPA
Organism:	Salmonella enterica subsp. enterica serovar Paratyphi A
Length:	111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YEEX_SALPA.

Description	E-value	Query Range	Subject Range
gi\|1788317, gi\|4... - gi\|49176178\|ref\|NP_416511.3\| hypothetical protein b2007 [Escherichia coli K12], gi\|1788317\|gb\|AAC750... gi\|30063449, gi\|... - gi\|30063449\|ref\|NP_837620.1\| hypothetical protein S2177 [Shigella flexneri 2a str. 2457T], gi\|300417... gi\|12516185, gi\|... - gi\|15802486\|ref\|NP_288512.1\| hypothetical protein Z3168 [Escherichia coli O157:H7 EDL933], gi\|125161... gi\|13362277 - gi\|13362277\|dbj\|BAB36232.1\| putative alpha helix protein [Escherichia coli O157:H7 str. Sakai] gi\|117624211, gi... - gi\|117624211\|ref\|YP_853124.1\| hypothetical protein APECO1_1105 [Escherichia coli APEC O1], gi\|115513... gi\|218699405, gi... - gi\|218699405\|ref\|YP_002407034.1\| hypothetical protein ECIAI39_1011 [Escherichia coli IAI39], gi\|2183... gi\|218352364, gi... - gi\|218695632\|ref\|YP_002403299.1\| hypothetical protein EC55989_2266 [Escherichia coli 55989], gi\|2183... gi\|74312549, gi\|... - gi\|74312549\|ref\|YP_310968.1\| hypothetical protein SSON_2077 [Shigella sonnei Ss046], gi\|73856026\|gb\|... gi\|218690069, gi... - gi\|218690069\|ref\|YP_002398281.1\| hypothetical protein ECED1_2358 [Escherichia coli ED1a], gi\|2184276... gi\|218365657, gi... - gi\|218558888\|ref\|YP_002391801.1\| hypothetical protein ECS88_2106 [Escherichia coli S88], gi\|21836565... gi\|89108827, gi\|... - gi\|89108827\|ref\|AP_002607.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|173... gi\|227835408, gi... - gi\|227887058\|ref\|ZP_04004863.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783540... gi\|91072869, gi\|... - gi\|91211295\|ref\|YP_541281.1\| hypothetical protein UTI89_C2282 [Escherichia coli UTI89], gi\|91072869\|... gi\|242377653, gi... - gi\|251785380\|ref\|YP_002999684.1\| hypothetical protein B21_01896 [Escherichia coli BL21], gi\|24237765... gi\|218432646, gi... - gi\|218705549\|ref\|YP_002413068.1\| hypothetical protein ECUMN_2353 [Escherichia coli UMN026], gi\|21843... gi\|237704465, gi... - gi\|237704465\|ref\|ZP_04534946.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|254288784, gi... - gi\|254288784\|ref\|YP_003054532.1\| hypothetical protein ECD_01910 [Escherichia coli BL21(DE3)], gi\|253... gi\|253973897, gi... - gi\|254161996\|ref\|YP_003045104.1\| hypothetical protein ECB_01910 [Escherichia coli B str. REL606], gi... gi\|218554569, gi... - gi\|218554569\|ref\|YP_002387482.1\| hypothetical protein ECIAI1_2077 [Escherichia coli IAI1], gi\|218361... gi\|170081637, gi... - gi\|170081637\|ref\|YP_001730957.1\| hypothetical protein ECDH10B_2154 [Escherichia coli str. K-12 subst... gi\|13362277 - gi\|13362277\|dbj\|BAB36232.1\| putative alpha helix protein [Escherichia coli O157:H7] gi\|209748274, gi... - gi\|92110362\|emb\|CAJ87631.1\| hypothetical protein [Escherichia coli], pir\|\|F64965 hypothetical protei... gi\|26248381, gi\|... - gi\|26248381\|ref\|NP_754421.1\| hypothetical protein c2534 [Escherichia coli CFT073], gi\|26108785\|gb\|AA... gi\|24052411, gi\|... - gi\|24113391\|ref\|NP_707901.1\| hypothetical protein SF2067 [Shigella flexneri 2a str. 301], gi\|2405241...	160.0	[0..1]	[109..23]
gi\|82543384, gi\|... - gi\|82543384\|ref\|YP_407331.1\| hypothetical protein SBO_0832 [Shigella boydii Sb227], gi\|81244795\|gb\|A...	159.0	[0..1]	[109..23]
gi\|82777462, gi\|... - gi\|82777462\|ref\|YP_403811.1\| hypothetical protein SDY_2237 [Shigella dysenteriae Sd197], gi\|81241610...	159.0	[0..1]	[109..23]
YEEX_ECOLC - UPF0265 protein YeeX OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=yeeX PE=3 SV=1 YEEX_ECOLI - UPF0265 protein yeeX - Escherichia coli gi\|124530708, gi... - gi\|124530708\|ref\|ZP_01701265.1\| protein of unknown function DUF496 [Escherichia coli B], gi\|12449902... YEEX_ECOBW - UPF0265 protein YeeX OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=yeeX PE=3 SV=1 gi\|253773062, gi... - gi\|253773062\|ref\|YP_003035893.1\| protein of unknown function DUF496 [Escherichia coli BL21(DE3)], gi... sp\|B7UT45\|YEEX_ECO27 - UPF0265 protein yeeX OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yeeX PE=3 SV=1 gi\|254593117, gi... - gi\|254793717\|ref\|YP_003078554.1\| hypothetical protein ECSP_2680 [Escherichia coli O157:H7 str. TW143... gi\|226237414 - gi\|226237414\|dbj\|BAH46936.1\| conserved protein [Escherichia coli O55:H7] gi\|38704040 - gi\|38704040\|ref\|NP_310836.2\| hypothetical protein ECs2809 [Escherichia coli O157:H7 str. Sakai] YEEX_ECOL5 - UPF0265 protein YeeX OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=yeeX PE=3 SV=1 gi\|194428750, gi... - gi\|75210050\|ref\|ZP_00710233.1\| COG2926: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|188014430, gi... - gi\|188014430\|gb\|EDU52552.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... YEEX_SHIFL - UPF0265 protein YeeX OS=Shigella flexneri GN=yeeX PE=3 SV=1 gi\|192955215, gi... - gi\|75214973\|ref\|ZP_00713442.1\| COG2926: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|191167733, gi... - gi\|75229131\|ref\|ZP_00715706.1\| COG2926: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|189365847, gi... - gi\|189365847\|gb\|EDU84263.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|75242843, gi\|... - gi\|75242843\|ref\|ZP_00726549.1\| COG2926: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|189354759, gi... - gi\|189354759\|gb\|EDU73178.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|192931424, gi... - gi\|75259157\|ref\|ZP_00730505.1\| COG2926: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|168777106, gi... - gi\|187767600\|gb\|EDU31444.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|188492276, gi... - gi\|75514049\|ref\|ZP_00736379.1\| COG2926: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|189360763, gi... - gi\|189360763\|gb\|EDU79182.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... YEEX_ECO57 - UPF0265 protein YeeX OS=Escherichia coli O157:H7 GN=yeeX PE=3 SV=1 gi\|189370270, gi... - gi\|189370270\|gb\|EDU88686.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|188998759, gi... - gi\|188998759\|gb\|EDU67745.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... EG13391 - UPF0265 family protein / Function unknown, UPF0265 family EG13391 - UPF0265 family protein / Function unknown, UPF0265 family gi\|194431426, gi... - gi\|83571279\|ref\|ZP_00922720.1\| COG2926: Uncharacterized protein conserved in bacteria [Shigella dyse... gi\|83588009, gi\|... - gi\|83588009\|ref\|ZP_00926634.1\| COG2926: Uncharacterized protein conserved in bacteria [Escherichia c... YEEX_SHIB3 - UPF0265 protein YeeX OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=yeeX PE=3 SV=1 YEEX_ECOL6 - UPF0265 protein YeeX OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yeeX PE=3 SV=... YEEX_ECO24 - UPF0265 protein YeeX OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=yeeX PE=3 SV=1 YEEX_ECOL6 - UPF0265 protein yeeX OS=Escherichia coli O6 GN=yeeX PE=3 SV=1 YEEX_ECOHS - UPF0265 protein YeeX OS=Escherichia coli O9:H4 (strain HS) GN=yeeX PE=3 SV=1 gi\|217329702, gi... - gi\|217329702\|ref\|ZP_03445781.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... YEEX_ECO27 - UPF0265 protein YeeX OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yeeX PE=3 SV=1 YEEX_ECOSM - UPF0265 protein YeeX OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=yeeX PE=3 SV=1 gi\|189375957, gi... - gi\|189375957\|gb\|EDU94373.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|208810639, gi... - gi\|208810639\|ref\|ZP_03252515.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|195939523 - gi\|195939523\|ref\|ZP_03084905.1\| hypothetical protein EscherichcoliO157_24453 [Escherichia coli O157:... gi\|208741707, gi... - gi\|208821584\|ref\|ZP_03261904.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|208731167, gi... - gi\|208816824\|ref\|ZP_03257944.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... YEEX_ECOSE - UPF0265 protein YeeX OS=Escherichia coli (strain SE11) GN=yeeX PE=3 SV=1 YEEX_ECO5E - UPF0265 protein YeeX OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yeeX PE=3 SV=1	151.0	[0..1]	[109..1]
YEEX_ESCFE - UPF0265 protein YeeX OS=Escherichia fergusonii GN=yeeX PE=3 SV=1	149.0	[0..1]	[111..1]
Y855_YERPA - UPF0265 protein YPA_0855 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=YPA_0855 PE=3 SV=1 Y2420_YERPN - UPF0265 protein YPN_2420 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=YPN_2420 PE=3 SV=1 Y2514_YERPY - UPF0265 protein YPK_2514 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_2514 PE=3... Y1560_YERPE - UPF0265 protein YPO1560/y2607/YP_1448 OS=Yersinia pestis GN=YPO1560 PE=3 SV=1 Y1683_YERPB - UPF0265 protein YPTS_1683 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS_1683 PE=... Y1571_YERPS - UPF0265 protein YPTB1571 OS=Yersinia pseudotuberculosis GN=YPTB1571 PE=3 SV=1 Y2417_YERP3 - UPF0265 protein YpsIP31758_2417 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=Yp... gi\|165923387, gi... - gi\|165924327\|ref\|ZP_02220159.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|166009274, gi... - gi\|166009274\|ref\|ZP_02230172.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166211724, gi... - gi\|166211724\|ref\|ZP_02237759.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|45436132, gi\|... - gi\|45441272\|ref\|NP_992811.1\| hypothetical protein YP_1448 [Yersinia pestis biovar Microtus str. 9100... Y1416_YERPP - UPF0265 protein YPDSF_1416 OS=Yersinia pestis (strain Pestoides F) GN=YPDSF_1416 PE=3 SV=1 gi\|167400410, gi... - gi\|167400410\|ref\|ZP_02305923.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|149366479, gi... - gi\|149366479\|ref\|ZP_01888513.1\| hypothetical protein YPE_1707 [Yersinia pestis CA88-4125], gi\|149290... gi\|167470372 - gi\|167470372\|ref\|ZP_02335076.1\| hypothetical protein YpesF_21397 [Yersinia pestis FV-1] gi\|229894241, gi... - gi\|229894241\|ref\|ZP_04509424.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229703639\|gb\|EEO... gi\|115347310, gi... - gi\|218928699\|ref\|YP_002346574.1\| hypothetical protein YPO1560 [Yersinia pestis CO92], gi\|16121831\|re... gi\|229843655, gi... - gi\|229843655\|ref\|ZP_04463798.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... Y1571_YERPS - UPF0265 protein YPTB1571 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=YPTB1571 PE=3... gi\|229841544, gi... - gi\|229841544\|ref\|ZP_04461703.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi...	141.0	[0..2]	[104..3]
Y1134_SODGM - UPF0265 protein SG1134 OS=Sodalis glossinidius (strain morsitans) GN=SG1134 PE=3 SV=1	141.0	[0..1]	[105..1]
gi\|167421753, gi... - gi\|167421753\|ref\|ZP_02313506.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167057013, gi... - gi\|167424164\|ref\|ZP_02315917.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|89105280, gi\|... - gi\|89105280\|ref\|ZP_01177802.1\| COG2926: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|21959483, gi\|... - gi\|22126488\|ref\|NP_669911.1\| hypothetical protein y2607 [Yersinia pestis KIM], gi\|21959483\|gb\|AAM861... gi\|117673984 - gi\|117673984\|ref\|ZP_01497042.1\| hypothetical protein YpseI_02002197 [Yersinia pseudotuberculosis IP ...	140.0	[0..2]	[104..5]
Y2560_PECAS - UPF0265 protein ECA2560 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=ECA2560 ... Y2560_ERWCT - UPF0265 protein ECA2560 OS=Erwinia carotovora subsp. atroseptica GN=ECA2560 PE=3 SV=1	138.0	[0..3]	[104..4]
Y2843_PHOLL, YS4... - (Q7N376) Hypothetical UPF0265 protein plu2843, UPF0265 protein plu2843 OS=Photorhabdus luminescens s... Y2843_PHOLL - UPF0265 protein plu2843 OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 ...	138.0	[0..2]	[104..3]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METTKPSFQD VLEFVRLFRR KNKLQREIQD IEKKIRDNQK RVLLLDNLSD YIKPGMSVEA  60
   61 IQGIIASMKS DYEDRVDDYI IKNAEISKER RDISKKLKAM GEMKHADVKA E

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	68.366532
Match:	PF04363.3
Description:	No description for PF04363.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits