YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|27065821
Organism:	Homo sapiens
Length:	243 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|27065821.

Description	E-value	Query Range	Subject Range
gi\|4996226 - gi\|4996226\|dbj\|BAA78377.1\| Rad51 [Cynops pyrrhogaster]	254.0	[0..1]	[243..95]
gi\|108878168, gi... - gi\|157112162\|ref\|XP_001657421.1\| DNA repair protein rad51 [Aedes aegypti], gi\|108878168\|gb\|EAT42393....	254.0	[0..1]	[243..99]
gi\|134254224, gi... - gi\|62858453\|ref\|NP_001016393.1\| hypothetical protein LOC549147 [Xenopus (Silurana) tropicalis], gi\|1...	254.0	[0..1]	[243..94]
gi\|2058709, gi\|1... - gi\|2058709\|gb\|AAB53330.1\| Rad51 homolog [Bombyx mori], gi\|112984536\|ref\|NP_001037484.1\| Rad51 homolo...	254.0	[0..1]	[243..96]
RA51A_XENLA - DNA repair protein RAD51 homolog A OS=Xenopus laevis GN=rad51-a PE=2 SV=1	253.0	[0..1]	[243..94]
gi\|63852088 - gi\|63852088\|dbj\|BAD98461.1\| RecA homolog Rad51 [Oreochromis niloticus]	252.0	[0..1]	[243..94]
gi\|54696276 - gi\|54696276\|gb\|AAV38510.1\| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [synthetic construc...	252.0	[0..1]	[243..97]
gi\|72071092, gi\|... - gi\|72071092\|ref\|XP_780118.1\| PREDICTED: similar to RAD51 homolog protein isoform 1 isoform 1 [Strong...	252.0	[0..1]	[243..93]
gi\|395377 - gi\|395377\|emb\|CAA80878.1\| RecA-like protein [Schizosaccharomyces pombe]	251.0	[0..1]	[243..112]

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Predicted Domain #1

Region A:
Residues: [1-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEIIQITTGS KELDKLLQGG IETGSITEXF GEFRTGKTQI CHTLAVTCQL PIDRGGGEGK  60
   61 AXYIDTEGTF RPERLLAVAE RYGLSGSDVL DNVAYARAFN TDHQTQLLYQ ASAXXVESRY 120
  121 ALLIVDSATA LYRTDYSGRG ELSARQXHLA RFLRXLLRLA DEFGVAVVIT NQVVAQVDGA 180
  181 AXFAADPKKP IGGNIIAHAS TTRLYLRKGR GETRICKIYD SPCLPEAEAX FAINADGVGD 240
  241 AKD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.09691
Match:	1n0wA
Description:	DNA repair protein Rad51
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits