YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33357544, gi\|...
Organism:	Homo sapiens
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33357544, gi|....

Description	E-value	Query Range	Subject Range
gi\|109095383, gi... - gi\|109095393\|ref\|XP_001111735.1\| PREDICTED: complement component 1, s subcomponent isoform 11 [Macac...	152.0	[0..1]	[159..16]
C1S - complement component 1, s subcomponent	151.0	[0..1]	[159..16]
gi\|114643130, gi... - gi\|114643134\|ref\|XP_001163794.1\| PREDICTED: similar to complement subcomponent C1s (EC 3.4.21.42) pr...	151.0	[0..1]	[159..16]
gi\|73997275, gi\|... - gi\|73997279\|ref\|XP_867216.1\| PREDICTED: similar to Complement C1s subcomponent precursor (C1 esteras...	150.0	[0..1]	[159..22]
CASP_MESAU - Calcium-dependent serine proteinase OS=Mesocricetus auratus PE=1 SV=1	148.0	[0..1]	[159..22]
C1S_PIG - Complement C1s subcomponent OS=Sus scrofa PE=2 SV=1	148.0	[0..1]	[159..16]
gi\|3080542, gi\|7... - pir\|\|JC6554 complement subcomponent C 1SBAR.GIF (EC 3.4.21.42) precursor [similarity] - rat, gi\|308...	148.0	[0..1]	[159..22]
gi\|20073175 - gi\|20073175\|gb\|AAH27183.1\| Similar to complement component 1, s subcomponent [Mus musculus] gi\|149049498 - gi\|149049498\|gb\|EDM01952.1\| rCG29725, isoform CRA_b [Rattus norvegicus]	147.0	[0..1]	[159..22]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPTMYGEILS PNYPQAYPSE VEKSWDIEVP EGYGIHLYFT HLDIELSENC AYDSVQIISG  60
   61 DTEEGRLCGQ RSSNNPHSPI VEEFQVPYNK LQVIFKSDFS NEERFTGFAA YYVATDINEC 120
  121 TDFVDVPCSH FCNNFIGGYF CSCPPEYFLH DDMKNCGVN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.0
Match:	1nziA
Description:	Complement C1S component
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.286076792172079	bayes_pls_golite062009
protein binding	0.14494900666454	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: