YRC Public Data Repository - Protein Structure Prediction

Protein:	SRP19_PONAB
Organism:	Pongo abelii
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRP19_PONAB.

Description	E-value	Query Range	Subject Range
gi\|12846431 - gi\|12846431\|dbj\|BAB27165.1\| unnamed protein product [Mus musculus]	4.0E-52	[1..135]	[1..135]
gi\|27683535, gi\|... - gi\|27683535\|ref\|XP_214599.1\| PREDICTED: similar to signal recognition particle 19kDa [Rattus norvegi...	1.0E-51	[1..135]	[1..135]
SRP19 - signal recognition particle 19kDa	9.0E-51	[1..135]	[1..135]
gi\|197100382 - gi\|197100382\|ref\|NP_001125454.1\| signal recognition particle 19kDa [Pongo abelii] gi\|55728098 - gi\|55728098\|emb\|CAH90799.1\| hypothetical protein [Pongo abelii]	2.0E-50	[1..135]	[3..137]
SRP19_BOVIN - Signal recognition particle 19 kDa protein OS=Bos taurus GN=SRP19 PE=2 SV=1	3.0E-50	[1..135]	[1..135]
gi\|73954385, gi\|... - gi\|73954385\|ref\|XP_536284.2\| PREDICTED: similar to signal recognition particle 19kDa [Canis familiar...	2.0E-49	[1..135]	[1..135]
gi\|47086995, gi\|... - gi\|47086995\|ref\|NP_998508.1\| signal recognition particle 19 [Danio rerio], gi\|31419453\|gb\|AAH53168.1...	7.0E-45	[6..133]	[5..131]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACAAARSPA DQDRFICIYP AYLNNKKTIA EGRRIPISKA VENPTATEIQ DVCSAVGLNV  60
   61 FLEKNKMYSR EWNRDVQYRG RVRVQLKQED GSLCLVQFPS RKSVMLYAAE MIPKLKTRTQ 120
  121 KTGGADQSLQ QGEGSKKGKG KKKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.09691
Match:	1jidA
Description:	SRP19
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
7S RNA binding	3.46075155738545	bayes_pls_golite062009
binding	0.6176804335696	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: