YRC Public Data Repository - Protein Structure Prediction

Protein:	SBDS_PONAB
Organism:	Pongo abelii
Length:	250 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SBDS_PONAB.

Description	E-value	Query Range	Subject Range
SBDS_MOUSE - Ribosome maturation protein SBDS OS=Mus musculus GN=Sbds PE=1 SV=4	5.0E-93	[1..250]	[1..250]
gi\|47221046 - gi\|47221046\|emb\|CAG12740.1\| unnamed protein product [Tetraodon nigroviridis]	5.0E-93	[1..249]	[1..249]
SBDS_RAT - Ribosome maturation protein SBDS OS=Rattus norvegicus GN=Sbds PE=2 SV=1	1.0E-92	[1..250]	[1..250]
SBDS_BOVIN - Ribosome maturation protein SBDS OS=Bos taurus GN=SBDS PE=2 SV=1	3.0E-92	[1..250]	[1..250]
SBDS_XENTR - Ribosome maturation protein SBDS OS=Xenopus tropicalis GN=sbds PE=2 SV=1	3.0E-91	[1..250]	[1..250]
SBDS_CHICK - Ribosome maturation protein SBDS OS=Gallus gallus GN=SBDS PE=2 SV=1	3.0E-90	[1..250]	[1..250]
gi\|48129273 - gi\|48129273\|ref\|XP_396646.1\| PREDICTED: similar to Shwachman-Bodian-Diamond syndrome protein [Apis m...	8.0E-90	[3..250]	[7..255]
gi\|4929663 - gi\|4929663\|gb\|AAD34092.1\|AF151855_1 CGI-97 protein [Homo sapiens]	2.0E-89	[1..250]	[1..250]
gi\|73957623 - gi\|73957623\|ref\|XP_848632.1\| PREDICTED: similar to Shwachman-Bodian-Diamond syndrome protein [Canis ...	1.0E-88	[1..250]	[1..249]
gi\|119112438, gi... - gi\|119112438\|ref\|XP_317609.3\| AGAP007882-PA [Anopheles gambiae str. PEST], gi\|116123353\|gb\|EAA12796.... AGAP007882-PA - Ribosome maturation protein SBDS\|protein_coding\|3R:2464384:2465145:-1\|gene:AGAP007882	3.0E-87	[3..250]	[4..253]

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Predicted Domain #1

Region A:
Residues: [1-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIFTPTNQI RLTNVAVVRM KRAGKRFEIA CYKNKVVGWR SGVEKDLDEV LQTHSVFVNV  60
   61 SKGQVAKKED LISAFGTDDQ TEICKQILTK GEVQVSDKER HTQLEQMFRD IATIVADKCV 120
  121 NPETKRPYTV ILIERAMKDI HYSVKTNKST KQQALEVIKQ LKEKMKIERA HMRLRFILPV 180
  181 NEGKKLKEKL KPLIKVIESE DYGQQLEIVC LIDPGCFREI DELIKKETKG KGSLEVLNLK 240
  241 DVEEGDEKFE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	78.221849
Match:	1p9qC
Description:	Structure of a hypothetical protein AF0491 from Archaeoglobus fulgidus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits