YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|34810991, gi\|...
Organism:	Homo sapiens
Length:	83 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34810991, gi|....

Description	E-value	Query Range	Subject Range
gi\|8439511 - gi\|8439511\|dbj\|BAA96543.1\| p67-phox [Tursiops truncatus]	151.0	[0..5]	[83..351]
gi\|114568372 - gi\|114568372\|ref\|XP_514049.2\| PREDICTED: hypothetical protein isoform 6 [Pan troglodytes]	151.0	[0..6]	[83..271]
gi\|119611566, gi... - gi\|22023953\|gb\|AAM89263.1\|AF527950_1 p67phox-like protein [Homo sapiens], gi\|189069210\|dbj\|BAG35548....	149.0	[0..6]	[83..352]
gi\|197101892 - gi\|197101892\|ref\|NP_001127613.1\| neutrophil cytosolic factor 2 [Pongo abelii] gi\|55732552 - gi\|55732552\|emb\|CAH92976.1\| hypothetical protein [Pongo abelii]	149.0	[0..6]	[83..352]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSHXAYTLKV HYKYTVVXKT QPGLPYSQVR DXVSKKLELR LEHTKLSYRP RDSNELVPLS  60
   61 EDSXKDAWGQ VKNYCLTLWC ENT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.0
Match:	1oeyA
Description:	Heterodimer of p40phox and p67phox PB1 domains from human NADPH oxidase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits