YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|34810947
Organism:	Caenorhabditis elegans
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34810947.

Description	E-value	Query Range	Subject Range
gi\|73962054, gi\|... - gi\|73962056\|ref\|XP_859801.1\| PREDICTED: similar to Vesicle-associated membrane protein-associated pr...	140.0	[0..11]	[115..15]
VAPA_PONPY - Vesicle-associated membrane protein-associated protein A - Pongo pygmaeus (Orangutan) gi\|114672227 - gi\|114672227\|ref\|XP_001135552.1\| PREDICTED: vesicle-associated membrane protein-associated protein A... VAPA_PONAB - Vesicle-associated membrane protein-associated protein A OS=Pongo abelii GN=VAPA PE=2 SV=2 VAPA - VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa	139.0	[0..11]	[115..15]
gi\|42734418, gi\|... - gi\|42734418\|ref\|NP_956212.2\| VAMP (vesicle-associated membrane protein)-associated protein A [Danio ...	139.0	[0..11]	[115..8]
gi\|61365583, gi\|... - gi\|61365587\|gb\|AAX42732.1\| VAMP-associated protein A [synthetic construct], gi\|61365583\|gb\|AAX42731....	139.0	[0..11]	[115..8]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHHHHHHSX INVDPPTGNY PATGGNSTHN ITSESDSRLA FKVKSSNNEH YRVRPVYGFV  60
   61 DAKGKSKLDI NRLPGPPKED KIVIQYAEVP AEETDPXAPF KAGAQQGEII VKLIAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.69897
Match:	1m1sA
Description:	WR4
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.653234420802729	bayes_pls_golite062009
protein binding	0.170808849690486	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: