YRC Public Data Repository - Protein Structure Prediction

Protein:	RL30_HALS3
Organism:	Halobacterium salinarum R1
Length:	154 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL30_HALS3.

Description	E-value	Query Range	Subject Range
gi\|76779245 - gi\|76779245\|gb\|AAI06057.1\| RPL7 protein [Homo sapiens]	228.0	[0..1]	[153..159]
gi\|114620484 - gi\|114620484\|ref\|XP_519807.2\| PREDICTED: similar to ribosomal protein L7 [Pan troglodytes]	226.0	[0..1]	[153..113]
gi\|169145709, gi... - gi\|47271398\|ref\|NP_998809.1\| ribosomal protein L7 [Danio rerio], gi\|45504887\|gb\|AAS66968.1\| ribosoma...	225.0	[0..1]	[153..87]
gi\|15293877 - gi\|15293877\|gb\|AAK95131.1\| ribosomal protein L7 [Ictalurus punctatus]	225.0	[0..1]	[153..103]
gi\|94374880, gi\|... - gi\|94376419\|ref\|XP_979735.1\| PREDICTED: similar to 60S ribosomal protein L7 [Mus musculus], gi\|94374...	223.0	[0..1]	[153..138]
gi\|73999236 - gi\|73999236\|ref\|XP_535102.2\| PREDICTED: similar to 60S ribosomal protein L7 isoform 1 [Canis familia...	223.0	[0..1]	[153..100]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQALVQVRGP VDMSRDIQDT LEMLNIHSVN HCALVPETDT YSGMVAKVND YVAFGEPSEA  60
   61 VLTDLIESRG EPASGAGDVD DAWVAEHTEY DDVADLAGAL LAEETTLSDA GLAPVIRLHP 120
  121 PRGGHDGIKT PASDGGQLGK HTTEEIDHLL TDMR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.09691
Match:	1ffkT
Description:	Archaeal L30 (L30a)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits