YRC Public Data Repository - Protein Structure Prediction

Protein:	RHAM_SHIFL
Organism:	Shigella flexneri
Length:	104 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RHAM_SHIFL.

Description	E-value	Query Range	Subject Range
RHAM_OCEIH - L-rhamnose mutarotase OS=Oceanobacillus iheyensis GN=rhaM PE=3 SV=1 RHAM_OCEIH - L-rhamnose mutarotase OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831...	157.0	[0..1]	[103..1]
gi\|75230423, gi\|... - gi\|75230423\|ref\|ZP_00716909.1\| COG3254: Uncharacterized conserved protein [Escherichia coli B7A], gi... RHAM_ECO55 - L-rhamnose mutarotase OS=Escherichia coli (strain 55989 / EAEC) GN=rhaM PE=3 SV=1 gi\|75211284, gi\|... - gi\|75211284\|ref\|ZP_00711383.1\| COG3254: Uncharacterized conserved protein [Escherichia coli B171], g... RHAM_ECO24 - L-rhamnose mutarotase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rhaM PE=3 SV=1 RHAM_ECOSE - L-rhamnose mutarotase OS=Escherichia coli (strain SE11) GN=rhaM PE=3 SV=1 RHAM_ECOSM - L-rhamnose mutarotase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rhaM PE=3 SV=1 RHAM_SHISS - L-rhamnose mutarotase OS=Shigella sonnei (strain Ss046) GN=rhaM PE=3 SV=1 gi\|75258115, gi\|... - gi\|75258115\|ref\|ZP_00729576.1\| COG3254: Uncharacterized conserved protein [Escherichia coli E22], gi...	157.0	[0..1]	[104..1]
gi\|168786752, gi... - gi\|189373298\|gb\|EDU91714.1\| L-rhamnose 1-epimerase [Escherichia coli O157:H7 str. EC869], gi\|1687867... gi\|189001422, gi... - gi\|189001422\|gb\|EDU70408.1\| L-rhamnose 1-epimerase [Escherichia coli O157:H7 str. EC4076], gi\|168780... gi\|168775269, gi... - gi\|187769127\|gb\|EDU32971.1\| L-rhamnose 1-epimerase [Escherichia coli O157:H7 str. EC4196], gi\|168775... gi\|189362727, gi... - gi\|189362727\|gb\|EDU81146.1\| L-rhamnose 1-epimerase [Escherichia coli O157:H7 str. EC4486], gi\|168768... gi\|208735230, gi... - gi\|208813953\|ref\|ZP_03255282.1\| L-rhamnose 1-epimerase [Escherichia coli O157:H7 str. EC4045], gi\|20... gi\|208727948, gi... - gi\|208808147\|ref\|ZP_03250484.1\| L-rhamnose 1-epimerase [Escherichia coli O157:H7 str. EC4206], gi\|20... gi\|195937543 - gi\|195937543\|ref\|ZP_03082925.1\| hypothetical protein EscherichcoliO157_14017 [Escherichia coli O157:... gi\|189378055, gi... - gi\|189378055\|gb\|EDU96471.1\| L-rhamnose 1-epimerase [Escherichia coli O157:H7 str. EC508], gi\|1687995... gi\|25351558, gi\|... - pir\|\|C86079 hypothetical protein yiiL [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|12518797, gi\|... - gi\|15804491\|ref\|NP_290531.1\| hypothetical protein Z5445 [Escherichia coli O157:H7 EDL933], gi\|125187... gi\|168761721, gi... - gi\|189367893\|gb\|EDU86309.1\| L-rhamnose 1-epimerase [Escherichia coli O157:H7 str. EC4501], gi\|168761... RHAM_ECO57 - L-rhamnose mutarotase OS=Escherichia coli O157:H7 GN=rhaM PE=3 SV=1 gi\|189357127, gi... - gi\|189357127\|gb\|EDU75546.1\| L-rhamnose 1-epimerase [Escherichia coli O157:H7 str. EC4401], gi\|168755... gi\|188016756, gi... - gi\|188016756\|gb\|EDU54878.1\| L-rhamnose 1-epimerase [Escherichia coli O157:H7 str. EC4113], gi\|168748... gi\|254795899, gi... - gi\|254795899\|ref\|YP_003080736.1\| L-rhamnose mutarotase [Escherichia coli O157:H7 str. TW14359], gi\|2... gi\|13364304, gi\|... - gi\|15834082\|ref\|NP_312855.1\| hypothetical protein ECs4828 [Escherichia coli O157:H7 str. Sakai], gi\|... RHAM_ECOLU - L-rhamnose mutarotase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=rhaM PE=3 SV=1 gi\|217324484, gi... - gi\|217324484\|ref\|ZP_03440568.1\| L-rhamnose 1-epimerase [Escherichia coli O157:H7 str. TW14588], gi\|2... RHAM_ECO5E - L-rhamnose mutarotase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rhaM PE=3 SV=1 gi\|208818634, gi... - gi\|208818634\|ref\|ZP_03258954.1\| L-rhamnose 1-epimerase [Escherichia coli O157:H7 str. EC4042], gi\|20...	156.0	[0..1]	[104..1]
EG11865 - L-rhamnose mutarotase / L-rhamnose mutarotase RHAM_ECOBW - L-rhamnose mutarotase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=rhaM PE=3 SV=1 gi\|226838552, gi... - gi\|254039116\|ref\|ZP_04873166.1\| L-rhamnose mutarotase [Escherichia sp. 1_1_43], gi\|226838552\|gb\|EEH7... gi\|89110127, gi\|... - gi\|89110127\|ref\|AP_003907.1\| L-rhamnose mutarotase [Escherichia coli str. K-12 substr. W3110], gi\|85... gi\|188494275, gi... - gi\|75513951\|ref\|ZP_00736304.1\| COG3254: Uncharacterized conserved protein [Escherichia coli 53638], ... YIIL_ECOLI - Hypothetical protein yiiL - Escherichia coli RHAM_ECOHS - L-rhamnose mutarotase OS=Escherichia coli O9:H4 (strain HS) GN=rhaM PE=3 SV=1 gi\|124501265, gi... - gi\|124527563\|ref\|ZP_01699028.1\| L-rhamnose 1-epimerase [Escherichia coli B], gi\|124501265\|gb\|EAY4873... EG11865 - L-rhamnose mutarotase / L-rhamnose mutarotase RHAM_ECOLC - L-rhamnose mutarotase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rhaM PE=3 SV=1 RHAM_ECODH - L-rhamnose mutarotase OS=Escherichia coli (strain K12 / DH10B) GN=rhaM PE=3 SV=1	155.0	[0..1]	[104..1]
RHAM_SHIDS - L-rhamnose mutarotase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rhaM PE=3 SV=1	155.0	[0..1]	[104..1]
gi\|77977203 - gi\|77977203\|ref\|ZP_00832658.1\| COG3254: Uncharacterized conserved protein [Yersinia intermedia ATCC ...	154.0	[0..1]	[103..1]
gi\|52426379, gi\|... - gi\|52426379\|ref\|YP_089516.1\| hypothetical protein MS2324 [Mannheimia succiniciproducens MBEL55E], gi...	153.0	[0..1]	[103..16]
gi\|194438267, gi... - gi\|83586254\|ref\|ZP_00924890.1\| COG3254: Uncharacterized conserved protein [Escherichia coli 101-1], ... gi\|254290603, gi... - gi\|254290603\|ref\|YP_003056351.1\| L-rhamnose mutarotase [Escherichia coli BL21(DE3)], gi\|253979910\|gb... gi\|251787165, gi... - gi\|251787165\|ref\|YP_003001469.1\| hypothetical protein B21_03736 [Escherichia coli BL21], gi\|24237943... gi\|253975753, gi... - gi\|254163852\|ref\|YP_003046960.1\| L-rhamnose mutarotase [Escherichia coli B str. REL606], gi\|25397575...	153.0	[0..1]	[104..1]
gi\|75235502, gi\|... - gi\|75235502\|ref\|ZP_00719700.1\| COG3254: Uncharacterized conserved protein [Escherichia coli F11], gi... RHAM_ECOL6 - L-rhamnose mutarotase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rhaM PE=3 SV... RHAM_ECO81 - L-rhamnose mutarotase OS=Escherichia coli O81 (strain ED1a) GN=rhaM PE=3 SV=1 RHAM_ECO45 - L-rhamnose mutarotase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rhaM PE=3 SV=1 gi\|227885359, gi... - gi\|227885359\|ref\|ZP_04003164.1\| L-rhamnose 1-epimerase [Escherichia coli 83972], gi\|227837617\|gb\|EEJ... gi\|226902868, gi... - gi\|237702931\|ref\|ZP_04533412.1\| L-rhamnose mutarotase [Escherichia sp. 3_2_53FAA], gi\|226902868\|gb\|E... RHAM_ECOK1 - L-rhamnose mutarotase OS=Escherichia coli O1:K1 / APEC GN=rhaM PE=3 SV=1 RHAM_ECOUT - L-rhamnose mutarotase OS=Escherichia coli (strain UTI89 / UPEC) GN=rhaM PE=3 SV=1 RHAM_ECOL5 - L-rhamnose mutarotase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rhaM PE=3 SV=1 RHAM_ECOL6 - L-rhamnose mutarotase OS=Escherichia coli O6 GN=rhaM PE=3 SV=1	152.0	[0..1]	[104..1]
gi\|238725002, gi... - gi\|77973600\|ref\|ZP_00829146.1\| COG3254: Uncharacterized conserved protein [Yersinia frederiksenii AT...	152.0	[0..1]	[103..1]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRKAFVMQV NPDAHEEYQR RHNPIWPELE AVLKSHGVHN YAIYLDKARN LLFAMVEIES  60
   61 EERWNAVAST DVCQRWWKYM TDVMPANPDN SPVSSELQEV FYLP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	1x8dA
Description:	Crystal structure of E. coli YiiL protein containing L-rhamnose
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits