YRC Public Data Repository - Protein Structure Prediction

Protein:	RHAMD_SALPB
Organism:	Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7
Length:	405 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RHAMD_SALPB.

Description	E-value	Query Range	Subject Range
RHMD_ECOL5 - L-rhamnonate dehydratase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rhmD PE=3 SV=1 gi\|75243062 - gi\|75243062\|ref\|ZP_00726768.1\| COG4948: L-alanine-DL-glutamate epimerase and related enzymes of enol...	1.0E-89	[1..405]	[1..405]
RHMD_ECOL6 - L-rhamnonate dehydratase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rhmD PE=3... gi\|227835656, gi... - gi\|227887306\|ref\|ZP_04005111.1\| L-rhamnonate dehydratase [Escherichia coli 83972], gi\|227835656\|gb\|E... RHMD_ECOL6, RHAM... - L-rhamnonate dehydratase OS=Escherichia coli O6 GN=rhmD PE=3 SV=1, L-rhamnonate dehydratase OS=Esche...	3.0E-89	[1..405]	[1..405]
RHMD_SHIBS - L-rhamnonate dehydratase OS=Shigella boydii serotype 4 (strain Sb227) GN=rhmD PE=3 SV=1	5.0E-89	[1..405]	[1..405]
RHMD_SALPK - L-rhamnonate dehydratase OS=Salmonella paratyphi A (strain AKU_12601) GN=rhmD PE=3 SV=1 RHMD_SALPA - L-rhamnonate dehydratase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=rhmD PE=3 SV=1 RHMD_SALPA, RHAM... - L-rhamnonate dehydratase OS=Salmonella paratyphi A GN=rhmD PE=3 SV=1, L-rhamnonate dehydratase OS=Sa...	6.0E-89	[1..405]	[1..405]
RHMD_ECOHS - L-rhamnonate dehydratase OS=Escherichia coli O9:H4 (strain HS) GN=rhmD PE=3 SV=1	7.0E-89	[1..405]	[1..405]
RHMD_ECOUT - L-rhamnonate dehydratase OS=Escherichia coli (strain UTI89 / UPEC) GN=rhmD PE=3 SV=1 gi\|226901091, gi... - gi\|237704725\|ref\|ZP_04535206.1\| L-rhamnonate dehydratase [Escherichia sp. 3_2_53FAA], gi\|226901091\|g... RHMD_ECOK1 - L-rhamnonate dehydratase OS=Escherichia coli O1:K1 / APEC GN=rhmD PE=3 SV=1 RHMD_ECO45 - L-rhamnonate dehydratase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rhmD PE=3 SV=1	1.0E-88	[1..405]	[1..405]
gi\|124501887, gi... - gi\|124526416\|ref\|ZP_01698369.1\| Mandelate racemase/muconate lactonizing enzyme, C-terminal domain pr... RHMD_ECOBW - L-rhamnonate dehydratase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=rhmD PE=3 SV=1 YFAW_ECOLI - Hypothetical protein yfaW - Escherichia coli gi\|242377881, gi... - gi\|251785608\|ref\|YP_002999912.1\| hypothetical protein B21_02132 [Escherichia coli BL21], gi\|24237788... gi\|75512723, gi\|... - gi\|75512723\|ref\|ZP_00735225.1\| COG4948: L-alanine-DL-glutamate epimerase and related enzymes of enol... gi\|253974159, gi... - gi\|254162258\|ref\|YP_003045366.1\| predicted enolase [Escherichia coli B str. REL606], gi\|253974159\|gb... gi\|254289019, gi... - gi\|254289019\|ref\|YP_003054767.1\| predicted enolase [Escherichia coli BL21(DE3)], gi\|253978326\|gb\|ACT... gi\|16130182\|ref\|... - predicted enolase [Escherichia coli str. K-12 substr. MG1655] RHMD_ECOLC - L-rhamnonate dehydratase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rhmD PE=3 SV=... gi\|1788580, gi\|1... - gi\|1788580\|gb\|AAC75307.1\| predicted enolase [Escherichia coli str. K-12 substr. MG1655], gi\|16130182... gi\|89109064, gi\|... - gi\|89109064\|ref\|AP_002844.1\| predicted enolase [Escherichia coli str. K-12 substr. W3110], gi\|179960... RHMD_ECODH - L-rhamnonate dehydratase OS=Escherichia coli (strain K12 / DH10B) GN=rhmD PE=3 SV=1	1.0E-88	[1..405]	[1..405]
gi\|254794142, gi... - gi\|254794142\|ref\|YP_003078979.1\| predicted enolase [Escherichia coli O157:H7 str. TW14359], gi\|25459... gi\|209765432, gi... - pir\|\|F85864 probable racemase Z3505 [imported] - Escherichia coli (strain O157:H7, substrain EDL933... gi\|15802796, gi\|... - gi\|15802796\|ref\|NP_288823.1\| putative racemase [Escherichia coli O157:H7 EDL933], gi\|12516590\|gb\|AAG... RHMD_ECO57 - L-rhamnonate dehydratase OS=Escherichia coli O157:H7 GN=rhmD PE=3 SV=1 gi\|13362605, gi\|... - gi\|15832389\|ref\|NP_311162.1\| putative racemase [Escherichia coli O157:H7 str. Sakai], gi\|13362605\|db...	2.0E-88	[1..405]	[1..405]
RHAMD_SALTY - L-rhamnonate dehydratase OS=Salmonella typhimurium GN=yfaW PE=1 SV=1 RHMD_SALTY, RHAM... - L-rhamnonate dehydratase OS=Salmonella typhimurium GN=rhmD PE=1 SV=1, L-rhamnonate dehydratase OS=Sa... RHMD_SALTY - L-rhamnonate dehydratase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=rhmD PE=...	6.0E-88	[1..405]	[1..405]
gi\|114794745, gi... - gi\|114794746\|pdb\|2I5Q\|B Chain B, Crystal Structure Of Apo L-Rhamnonate Dehydratase From Escherichia ...	6.0E-88	[1..405]	[3..407]

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Predicted Domain #1

Region A:
Residues: [1-405]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENIMTLPKI KHVRAWFIGG ATAEKGAGGG DYHDQGGNHW IDDHIATPMS KYRDYEQSRQ  60
   61 SFGINVLGTL IVEVEAENGQ TGFAVSTAGE MGCFIVEKHL NRFIEGKCVS DIKLIHDQML 120
  121 GATMYYSGSG GLVMNTISCV DLALWDLFGK VVGLPVYKLL GGAVRDEIQF YATGARPDLA 180
  181 KEMGFIGGKM PTHWGPHDGD AGIRKDAAMV ADMREKCGPD FWLMLDCWMS QDVNYATKLA 240
  241 HACAPFNLKW IEECLPPQQY EGYRELKRNA PAGMMVTSGE HHGTLQSFRT LAETGIDIMQ 300
  301 PDVGWCGGLT TLVEIAALAK SRGQLVVPHG SSVYSHHAVI TFTNTPFSEF LMTSPDCSTL 360
  361 RPQFDPILLD EPVPVNGRIH KSVLDKPGFG VELNRDCHLK RPYSH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	89.522879
Match:	2i5qA
Description:	No description for 2i5qA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits