YRC Public Data Repository - Protein Structure Prediction

Protein:	OSTCN_SPAAU
Organism:	Sparus aurata
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OSTCN_SPAAU.

Description	E-value	Query Range	Subject Range
gi\|58286828 - gi\|58286828\|gb\|AAV80233.1\| osteocalcin [Dicentrarchus labrax]	143.0	[0..1]	[97..1]
OSTCN_ARGRE - Osteocalcin OS=Argyrosomus regius GN=bglap PE=1 SV=1	139.0	[0..1]	[97..1]
gi\|71025156 - gi\|71025156\|gb\|AAQ13575.1\|AF144707_1 osteocalcin [Halobatrachus didactylus]	133.0	[0..1]	[97..1]
gi\|56789990 - gi\|56789990\|gb\|AAW30003.1\| bone Gla protein [Solea senegalensis]	127.0	[0..1]	[97..1]
gi\|37729652, gi\|... - gi\|37729652\|gb\|AAO53254.1\| osteocalcin [Danio rerio], gi\|139949243\|ref\|NP_001077326.1\| hypothetical ...	125.0	[0..1]	[97..1]
gi\|46575806 - gi\|46575806\|dbj\|BAD16774.1\| osteocalcin [Rana catesbeiana]	113.0	[0..1]	[95..1]
gi\|89994012, gi\|... - gi\|90962984\|ref\|NP_001035098.1\| bone gamma-carboxyglutamate (gla) protein [Ovis aries], gi\|89994012\|...	112.0	[0..6]	[95..5]
OSTCN_XENLA - Osteocalcin OS=Xenopus laevis GN=bglap PE=1 SV=2	112.0	[0..1]	[95..1]
gi\|37542797 - gi\|37542797\|gb\|AAL55444.1\| matrix Gla protein [Sparus aurata]	110.0	[0..3]	[94..4]

Back

Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTLAFLVLC SLAAICLTSD ASTGSQPASD NPADEGMFVE RDQASAVVRQ KRAAGQLSLT  60
   61 QLESLREVCE LNLACEHMMD TEGIIAAYTA YYGPIPY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits