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View Structure Prediction Details

Protein: RBMX_PANTR
Organism: Pan troglodytes
Length: 391 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RBMX_PANTR.

Description E-value Query
Range
Subject
Range
gi|73990618 - gi|73990618|ref|XP_853786.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G (hnRNP ...
3.0E-40 [1..305] [120..424]
RBMX_RAT - RNA-binding motif protein, X chromosome OS=Rattus norvegicus GN=Rbmx PE=1 SV=1
2.0E-33 [1..367] [1..367]
RBMX_MACFA - RNA-binding motif protein, X chromosome OS=Macaca fascicularis GN=RBMX PE=2 SV=1
5.0E-31 [1..391] [1..391]
gi|76658699, gi|... - gi|76658701|ref|XP_881201.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G (hnRNP ...
5.0E-31 [1..391] [1..391]
RBMX_MOUSE - RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx PE=1 SV=1
1.0E-30 [1..391] [1..391]
gi|4504451, gi|3... - ref|NP_002130.1| RNA binding motif protein, X chromosome [Homo sapiens], gi|3256007|emb|CAA80599.1|...
1.0E-30 [1..391] [1..391]

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Predicted Domain #1
Region A:
Residues: [1-98]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEADRPGKL FIGGLNTETN EKALEAVFGK YGRIVEVLLM KDRETNKSRG FAFVTFESPA  60
   61 DAKDAARDMN GKSLDGKAIK VEQATKPSFE SGRRGPPP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.522879
Match: 2fy1A
Description: No description for 2fy1A was found.

Predicted Domain #2
Region A:
Residues: [99-202]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPRSRGPPRG LRGGRGGSGG TRGPPSRGGH MDDGGYSMNF NMSSSRGPLP VKRGPPPRSG  60
   61 GPPPKRSAPS GPVRSSSGMG GRAPVSRGRD SYGGPPRREP LPSR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [203-391]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RDVYLSPRDD GYSTKDSYSS RDYPSSRDTR DYAPPPRDYT YRDYGHSSSR DDYPSRGYSD  60
   61 RDGYGRDRDY SDHPSGGSYR DSYESYGNSR SAPPTRGPPP SYGGSSRYDD YSSSRDGYGG 120
  121 SRDSYSSSRS DLYSSGRDRV GRQERGLPPS MERGYPPPRD SYSSSSRGAP RGGGRGGSRS 180
  181 DRGGGRSRY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle