YRC Public Data Repository - Protein Structure Prediction

Protein:	HCAC_PHOLL
Organism:	Photorhabdus luminescens subsp. laumondii
Length:	105 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HCAC_PHOLL.

Description	E-value	Query Range	Subject Range
gi\|254593890, gi... - gi\|254794490\|ref\|YP_003079327.1\| 3-phenylpropionate dioxygenase, predicted ferredoxin subunit [Esche... gi\|254162514, gi... - gi\|254162514\|ref\|YP_003045622.1\| 3-phenylpropionate dioxygenase, predicted ferredoxin subunit [Esche... gi\|253978582, gi... - gi\|254289275\|ref\|YP_003055023.1\| 3-phenylpropionate dioxygenase, predicted ferredoxin subunit [Esche... gi\|251785867, gi... - gi\|251785867\|ref\|YP_003000171.1\| hypothetical protein B21_02396 [Escherichia coli BL21], gi\|24237814... gi\|238901705, gi... - gi\|238901705\|ref\|YP_002927501.1\| 3-phenylpropionate dioxygenase, putative ferredoxin subunit [Escher... EG13458 - 3-phenylpropionate dioxygenase, ferredoxin subunit / 3-Phenylpropionate /cinnamic acid dioxygenase, f... gi\|1799958, gi\|8... - gi\|89109346\|ref\|AP_003126.1\| 3-phenylpropionate dioxygenase, predicted ferredoxin subunit [Escherich... gi\|188017155, gi... - gi\|188017155\|gb\|EDU55277.1\| 3-phenylpropionate dioxygenase ferredoxin subunit [Escherichia coli O157... HCAC_ECOLI - 3-phenylpropionate dioxygenase ferredoxin subunit (Digoxigenin ferredoxin subunit) - Escherichia col... gi\|168757802, gi... - gi\|189355299\|gb\|EDU73718.1\| 3-phenylpropionate dioxygenase ferredoxin subunit [Escherichia coli O157... gi\|168761157, gi... - gi\|189368412\|gb\|EDU86828.1\| 3-phenylpropionate dioxygenase ferredoxin subunit [Escherichia coli O157... gi\|189362173, gi... - gi\|189362173\|gb\|EDU80592.1\| 3-phenylpropionate dioxygenase ferredoxin subunit [Escherichia coli O157... gi\|187770704, gi... - gi\|187770704\|gb\|EDU34548.1\| 3-phenylpropionate dioxygenase ferredoxin subunit [Escherichia coli O157... HCAC_ECOHS - 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit OS=Escherichia coli O9:H4 (strain HS... gi\|124529507, gi... - gi\|124529507\|ref\|ZP_01700477.1\| Rieske (2Fe-2S) domain protein [Escherichia coli B], gi\|124499814\|gb... gi\|194427363, gi... - gi\|75211506\|ref\|ZP_00711596.1\| COG2146: Ferredoxin subunits of nitrite reductase and ring-hydroxylat... gi\|83586810, gi\|... - gi\|83586810\|ref\|ZP_00925441.1\| COG2146: Ferredoxin subunits of nitrite reductase and ring-hydroxylat... HCAC_ECO24 - 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit OS=Escherichia coli O139:H28 (strain... gi\|188491590, gi... - gi\|75515879\|ref\|ZP_00738014.1\| COG2146: Ferredoxin subunits of nitrite reductase and ring-hydroxylat... gi\|15832660, gi\|... - gi\|15832660\|ref\|NP_311433.1\| 3-phenylpropionate dioxygenase ferredoxin subunit [Escherichia coli O15... HCAC_SHISS - 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit OS=Shigella sonnei (strain Ss046) GN... gi\|75227450, gi\|... - gi\|75227450\|ref\|ZP_00714219.1\| COG2146: Ferredoxin subunits of nitrite reductase and ring-hydroxylat... gi\|75257964, gi\|... - gi\|75257964\|ref\|ZP_00729438.1\| COG2146: Ferredoxin subunits of nitrite reductase and ring-hydroxylat... gi\|208812130, gi... - gi\|208812130\|ref\|ZP_03253459.1\| 3-phenylpropionate dioxygenase ferredoxin subunit [Escherichia coli ... gi\|15803066, gi\|... - gi\|15803066\|ref\|NP_289096.1\| 3-phenylpropionate dioxygenase ferredoxin subunit [Escherichia coli O15... gi\|208741112, gi... - gi\|208820989\|ref\|ZP_03261309.1\| 3-phenylpropionate dioxygenase ferredoxin subunit [Escherichia coli ... gi\|209397149, gi... - gi\|209397149\|ref\|YP_002272014.1\| 3-phenylpropionate dioxygenase ferredoxin subunit [Escherichia coli... gi\|209913277, gi... - gi\|209920018\|ref\|YP_002294102.1\| 3-phenylpropionate dioxygenase ferredoxin subunit [Escherichia coli... gi\|217320005, gi... - gi\|217327638\|ref\|ZP_03443721.1\| 3-phenylpropionate dioxygenase ferredoxin subunit [Escherichia coli ... gi\|194432173, gi... - gi\|83570761\|ref\|ZP_00922204.1\| COG2146: Ferredoxin subunits of nitrite reductase and ring-hydroxylat... gi\|218555065, gi... - gi\|218555065\|ref\|YP_002387978.1\| 3-phenylpropionate dioxygenase ferredoxin subunit [Escherichia coli... gi\|218352899, gi... - gi\|218696167\|ref\|YP_002403834.1\| 3-phenylpropionate dioxygenase ferredoxin subunit [Escherichia coli... gi\|218706043, gi... - gi\|218706043\|ref\|YP_002413562.1\| 3-phenylpropionate dioxygenase ferredoxin subunit [Escherichia coli... gi\|168778513, gi... - gi\|189003419\|gb\|EDU72405.1\| 3-phenylpropionate dioxygenase ferredoxin subunit [Escherichia coli O157... gi\|189372345, gi... - gi\|189372345\|gb\|EDU90761.1\| 3-phenylpropionate dioxygenase ferredoxin subunit [Escherichia coli O157... gi\|168798918, gi... - gi\|189378603\|gb\|EDU97019.1\| 3-phenylpropionate dioxygenase ferredoxin subunit [Escherichia coli O157... gi\|169754105, gi... - gi\|170019177\|ref\|YP_001724131.1\| 3-phenylpropionate dioxygenase ferredoxin subunit [Escherichia coli... gi\|170082150, gi... - gi\|170082150\|ref\|YP_001731470.1\| 3-phenylpropionate dioxygenase ferredoxin subunit [Escherichia coli... gi\|170521638, gi... - gi\|170683920\|ref\|YP_001744729.1\| 3-phenylpropionate dioxygenase ferredoxin subunit [Escherichia coli... gi\|195936687 - gi\|195936687\|ref\|ZP_03082069.1\| 3-phenylpropionate dioxygenase ferredoxin subunit [Escherichia coli ... gi\|208808083, gi... - gi\|208808083\|ref\|ZP_03250420.1\| 3-phenylpropionate dioxygenase ferredoxin subunit [Escherichia coli ... HCAC_SHIFL - 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit OS=Shigella flexneri GN=hcaC PE=3 SV... gi\|30042186, gi\|... - gi\|30063930\|ref\|NP_838101.1\| 3-phenylpropionate dioxygenase ferredoxin subunit [Shigella flexneri 2a... gi\|24052965, gi\|... - gi\|24113869\|ref\|NP_708379.1\| 3-phenylpropionate dioxygenase ferredoxin subunit [Shigella flexneri 2a... EG13458 - 3-phenylpropionate dioxygenase, ferredoxin subunit / 3-Phenylpropionate /cinnamic acid dioxygenase, f... HCAC_ECO57 - 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit OS=Escherichia coli O157:H7 GN=hcaC ...	116.0	[0..1]	[105..1]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQLFVCTVE ELPDGGARKV EYTPDIALFH YDGEFFAVDD RCSHGNASIS EGYLEDNATV  60
   61 ECPLHTASFC LRTGKALCLP ATDPLKTYPV VVKDGNIYIT VSEEQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.522879
Match:	2e4pA
Description:	No description for 2e4pA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits