YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|34809605, gi\|...
Organism:	Escherichia coli
Length:	177 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34809605, gi|....

Description	E-value	Query Range	Subject Range
gi\|115372571, gi... - gi\|115372571\|ref\|ZP_01459879.1\| L-asparaginase [Stigmatella aurantiaca DW4/3-1], gi\|115370533\|gb\|EAU...	238.0	[0..2]	[177..81]
gi\|113728651, gi... - gi\|167645087\|ref\|YP_001682750.1\| peptidase T2 asparaginase 2 [Caulobacter sp. K31], gi\|167347517\|gb\|...	237.0	[0..1]	[177..29]
gi\|86143662, gi\|... - gi\|86143662\|ref\|ZP_01062038.1\| Asparaginase family protein [Flavobacterium sp. MED217], gi\|85829705\|... gi\|86143662, gi\|... - gi\|86143662\|ref\|ZP_01062038.1\| Asparaginase family protein [Flavobacterium sp. MED217], gi\|85829705\|...	235.0	[0..3]	[177..37]
gi\|69166597, gi\|... - gi\|69949373\|ref\|ZP_00637370.1\| Peptidase T2, asparaginase 2 [Shewanella frigidimarina NCIMB 400], gi...	234.0	[0..3]	[177..27]
gi\|78359609, gi\|... - gi\|78368336\|ref\|ZP_00838573.1\| Peptidase T2, asparaginase 2 [Shewanella sp. PV-4], gi\|78359609\|gb\|EA...	233.0	[0..3]	[177..29]
gi\|89889638, gi\|... - gi\|89889638\|ref\|ZP_01201149.1\| L-asparaginase I [Flavobacteria bacterium BBFL7], gi\|89517911\|gb\|EAS2...	231.0	[0..3]	[177..38]
gi\|108466737, gi... - gi\|108762857\|ref\|YP_629420.1\| asparaginase family protein [Myxococcus xanthus DK 1622], gi\|108466737...	231.0	[0..2]	[177..28]
gi\|82405708, gi\|... - gi\|82496352\|ref\|ZP_00881921.1\| asparaginase family protein [Shewanella sp. MR-4], gi\|82405708\|gb\|EAP...	230.0	[0..3]	[177..29]
gi\|82742276, gi\|... - gi\|82742276\|ref\|ZP_00904974.1\| asparaginase family protein [Shewanella sp. W3-18-1], gi\|82720360\|gb\|... gi\|77812040, gi\|... - gi\|77812807\|ref\|ZP_00812090.1\| Peptidase T2, asparaginase 2 [Shewanella putrefaciens CN-32], gi\|7781... gi\|124509777, gi... - gi\|124546725\|ref\|ZP_01705760.1\| peptidase T2, asparaginase 2 [Shewanella putrefaciens 200], gi\|12450...	230.0	[0..3]	[177..29]
gi\|78507177, gi\|... - gi\|78684953\|ref\|ZP_00849734.1\| asparaginase family protein [Shewanella sp. ANA-3], gi\|78507177\|gb\|EA...	230.0	[0..3]	[177..29]

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Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKAVIAIHGG AGAISRAQMS LQQELRYIEA LSAIVETGQK MLEAGESALD VVTEAVRLLE  60
   61 EXPLFNAGIG AVFTRDETHE LDACVMDGNT LKAGAVAGVS HLRNPVLAAR LVMEQSPHVM 120
  121 MIGEGAENFA FARGMERVSP EIFSTSLRYE QLLAARKEGA TVLDHSGAPL DEKQKMG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.221849
Match:	1jn9A
Description:	Structure of Putative Asparaginase Encoded by Escherichia coli ybiK Gene
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits