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View Structure Prediction Details

Protein: FRDC_PHOPR
Organism: Photobacterium profundum
Length: 127 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FRDC_PHOPR.

Description E-value Query
Range
Subject
Range
gi|171849106, gi... - gi|90108812|pdb|2B76|O Chain O, E. Coli Quinol Fumarate Reductase Frda E49q Mutation, gi|90108808|pd...
189.0 [0..2] [126..2]

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Predicted Domain #1
Region A:
Residues: [1-127]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNRKPYVRE MTRTWWKDDP FYRFYMVREA TILPLIFFTI CLTFGLGCLV KGPEAWAGWL  60
   61 SFMSNPIVVV LNILALLGSL FHAQTFFSMM PQVMPITIKG KKLDKTIIVL AQWAAVAAIS 120
  121 LFVLVLV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 48.522879
Match: 1kf6C
Description: Fumarate reductase subunit FrdC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
succinate dehydrogenase activity 3.77307162030081 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors 2.15706429275351 bayes_pls_golite062009
oxidoreductase activity 2.006262138179 bayes_pls_golite062009
electron carrier activity 1.35460962236208 bayes_pls_golite062009
catalytic activity 1.34226547326392 bayes_pls_golite062009
binding 0.407887533459531 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle