YRC Public Data Repository - Protein Structure Prediction

Protein:	DERL2_PONAB
Organism:	Pongo abelii
Length:	239 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DERL2_PONAB.

Description	E-value	Query Range	Subject Range
gi\|50758070 - gi\|50758070\|ref\|XP_415746.1\| PREDICTED: similar to carcinoma related gene [Gallus gallus]	2.0E-83	[1..239]	[122..360]
DERL2_MOUSE - Derlin-2 OS=Mus musculus GN=Derl2 PE=1 SV=2 gi\|149053255, gi... - gi\|149053255\|gb\|EDM05072.1\| rCG34415, isoform CRA_c [Rattus norvegicus], gi\|109491204\|ref\|XP_0010799...	3.0E-72	[1..239]	[1..239]
gi\|66267283, gi\|... - gi\|66773149\|ref\|NP_001019566.1\| Der1-like domain family, member 2 [Danio rerio], gi\|66267283\|gb\|AAH9...	1.0E-71	[1..239]	[1..239]
gi\|89269041, gi\|... - gi\|89269041\|emb\|CAJ81565.1\| Der1-like domain family, member 3derlin-3 [Xenopus tropicalis], gi\|62859...	2.0E-71	[1..239]	[1..239]
gi\|109488353 - gi\|109488353\|ref\|XP_001079920.1\| PREDICTED: similar to Der1-like domain family, member 2 [Rattus nor...	2.0E-71	[1..239]	[1..239]
gi\|114665972 - gi\|114665972\|ref\|XP_001166612.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes]	4.0E-71	[1..239]	[1..240]
gi\|72015515, gi\|... - gi\|72015515\|ref\|XP_786599.1\| PREDICTED: similar to Der1-like domain family, member 2 [Strongylocentr...	2.0E-69	[1..236]	[1..237]
gi\|54639131, gi\|... - gi\|54639131\|gb\|EAL28533.1\| GA13336-PA [Drosophila pseudoobscura], gi\|125776769\|ref\|XP_001359387.1\| G...	2.0E-68	[5..236]	[3..234]

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Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYQSLRLEY LQIPPVSRAY TTACVLTTAA VQLELITPFQ LYFNPELIFK HFQIWRLITN  60
   61 FLFFGPVGFN FLFNMIFLYR YCRMLEEGSF RGRTADFVFM FLFGGFLMTL FGLFVSLVFL 120
  121 GQAFTIMLVY VWSRRNPYVR MNFFGLLNFQ APFLPWVLMG FSLLLGNSII VDLLGIAVGH 180
  181 IYFFLEDVFP NQPGGIRILK TPSILKAIFD TPDEDPNYNP LPEERPGGFA WGEGQRLGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.30103
Match:	2nr9A
Description:	No description for 2nr9A was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.545407789079971	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: