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View Structure Prediction Details

Protein: gi|33356996
Organism: Homo sapiens
Length: 122 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33356996.

Description E-value Query
Range
Subject
Range
gi|55852768 - gi|55852768|gb|AAV67804.1| modified Homo sapiens anti-Pseudomonas aeruginosa IgG1 O6ad heavy chain [...
197.0 [0..13] [122..32]
gi|2765425 - gi|2765425|emb|CAA75032.1| immunoglobulin lambda heavy chain [Homo sapiens]
190.0 [0..13] [122..24]
gi|2392371, gi|2... - gi|2392373|pdb|1IGT|D Chain D, Structure Of Immunoglobulin, gi|2392371|pdb|1IGT|B Chain B, Structure...
188.0 [0..14] [122..6]

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Predicted Domain #1
Region A:
Residues: [1-122]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGSHHHHHH SQAQSKAQVL QSVAGQTLTV RCQYPPTGSL YEKKGWCKEA SALVCIRLVT  60
   61 SSKPRTMAWT SRFTIWDDPD AGFFTVTMTD LREEDSGHYW CRIYRPSDNS VSKSVRFYLV 120
  121 VS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 48.39794
Match: 1igtB
Description: Immunoglobulin heavy chain variable domain, VH; Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma; Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma; Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.483195558859675 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle