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View Structure Prediction Details

Protein: HFQ_YEREN
Organism: Yersinia enterocolitica
Length: 101 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HFQ_YEREN.

Description E-value Query
Range
Subject
Range
gi|238714287, gi... - gi|77957806|ref|ZP_00821853.1| COG1923: Uncharacterized host factor I protein [Yersinia bercovieri A...
160.0 [0..1] [101..1]
gi|167050090, gi... - gi|167400722|ref|ZP_02306231.1| RNA chaperone Hfq [Yersinia pestis biovar Antiqua str. UG05-0454], g...
gi|238725421, gi... - gi|77976470|ref|ZP_00831957.1| COG1923: Uncharacterized host factor I protein [Yersinia intermedia A...
gi|167419106, gi... - gi|167419106|ref|ZP_02310859.1| RNA chaperone Hfq [Yersinia pestis biovar Orientalis str. MG05-1020]...
HFQ_YERPG - RNA-binding protein Hfq OS=Yersinia pestis bv. Antiqua (strain Angola) GN=hfq PE=3 SV=1
gi|167423280, gi... - gi|167423280|ref|ZP_02315033.1| RNA chaperone Hfq [Yersinia pestis biovar Mediaevalis str. K1973002]...
HFQ_YERP3 - RNA-binding protein Hfq OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=hfq PE=3 S...
HFQ_YERPY - RNA-binding protein Hfq OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=hfq PE=3 SV=1
HFQ_YERPB - RNA-binding protein Hfq OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=hfq PE=3 SV=1
gi|150260583, gi... - gi|150260583|ref|ZP_01917311.1| RNA chaperone Hfq [Yersinia pestis CA88-4125], gi|149289991|gb|EDM40...
gi|165936451, gi... - gi|89102919|ref|ZP_01175521.1| COG1923: Uncharacterized host factor I protein [Yersinia pestis biova...
HFQ_YERPA - RNA-binding protein Hfq OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=hfq PE=3 SV=1
HFQ_YERPN - RNA-binding protein Hfq OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=hfq PE=3 SV=1
gi|165921329, gi... - gi|165926706|ref|ZP_02222538.1| RNA chaperone Hfq [Yersinia pestis biovar Orientalis str. F1991016],...
gi|229842323, gi... - gi|229842323|ref|ZP_04462478.1| RNA-binding protein Hfq [Yersinia pestis biovar Orientalis str. Indi...
gi|166011864, gi... - gi|166011864|ref|ZP_02232762.1| RNA chaperone Hfq [Yersinia pestis biovar Antiqua str. E1979001], gi...
gi|229696611, gi... - gi|229840245|ref|ZP_04460404.1| RNA-binding protein Hfq [Yersinia pestis biovar Orientalis str. PEXU...
gi|166213968, gi... - gi|166213968|ref|ZP_02240003.1| RNA chaperone Hfq [Yersinia pestis biovar Antiqua str. B42003004], g...
gi|229836633, gi... - gi|229836633|ref|ZP_04456799.1| RNA-binding protein Hfq [Yersinia pestis Pestoides A], gi|229706317|...
gi|21957342, gi|... - gi|22124544|ref|NP_667967.1| RNA-binding protein Hfq [Yersinia pestis KIM], gi|21957342|gb|AAM84218....
HFQ_YERPE - RNA-binding protein Hfq OS=Yersinia pestis GN=hfq PE=3 SV=3
HFQ_YERPS - RNA-binding protein Hfq OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=hfq PE=3 SV=1
gi|45440383, gi|... - gi|45440383|ref|NP_991922.1| RNA-binding protein Hfq [Yersinia pestis biovar Microtus str. 91001], g...
gi|15978471, gi|... - gi|218927576|ref|YP_002345451.1| RNA-binding protein Hfq [Yersinia pestis CO92], gi|16120708|ref|NP_...
HFQ_YERPS - Protein hfq OS=Yersinia pseudotuberculosis GN=hfq PE=3 SV=1
160.0 [0..1] [101..1]
HFQ_SODGM - RNA-binding protein Hfq OS=Sodalis glossinidius (strain morsitans) GN=hfq PE=3 SV=1
157.0 [0..1] [101..1]
gi|88939837, gi|... - gi|88939837|ref|ZP_01145282.1| Host factor Hfq [Acidiphilium cryptum JF-5], gi|88921471|gb|EAR40577....
154.0 [0..3] [98..77]
HFQ_SHIDS - RNA-binding protein Hfq OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=hfq PE=3 SV=1
151.0 [0..1] [101..1]
gi|168239733, gi... - gi|197287607|gb|EDY26999.1| RNA chaperone Hfq [Salmonella enterica subsp. enterica serovar Schwarzen...
gi|205336312, gi... - gi|205336312|gb|EDZ23076.1| RNA chaperone Hfq [Salmonella enterica subsp. enterica serovar Heidelber...
gi|168263287, gi... - gi|205347951|gb|EDZ34582.1| RNA chaperone Hfq [Salmonella enterica subsp. enterica serovar Hadar str...
gi|168464755, gi... - gi|195632777|gb|EDX51231.1| RNA chaperone Hfq [Salmonella enterica subsp. enterica serovar Newport s...
gi|205321592, gi... - gi|205321592|gb|EDZ09431.1| RNA chaperone Hfq [Salmonella enterica subsp. enterica serovar Saintpaul...
gi|205327104, gi... - gi|205327104|gb|EDZ13868.1| RNA chaperone Hfq [Salmonella enterica subsp. enterica serovar 4,[5],12:...
gi|205334216, gi... - gi|205334216|gb|EDZ20980.1| RNA chaperone Hfq [Salmonella enterica subsp. enterica serovar Kentucky ...
HFQ_SALPB - Protein hfq OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=hfq PE=3 SV=1
gi|213052281 - gi|213052281|ref|ZP_03345159.1| RNA-binding protein Hfq [Salmonella enterica subsp. enterica serovar...
gi|213423957 - gi|213423957|ref|ZP_03356937.1| RNA-binding protein Hfq [Salmonella enterica subsp. enterica serovar...
gi|213428672 - gi|213428672|ref|ZP_03361422.1| RNA-binding protein Hfq [Salmonella enterica subsp. enterica serovar...
gi|213583986 - gi|213583986|ref|ZP_03365812.1| RNA-binding protein Hfq [Salmonella enterica subsp. enterica serovar...
gi|199605083, gi... - gi|200387985|ref|ZP_03214597.1| RNA chaperone Hfq [Salmonella enterica subsp. enterica serovar Virch...
gi|204927069, gi... - gi|204927069|ref|ZP_03218271.1| RNA chaperone Hfq [Salmonella enterica subsp. enterica serovar Javia...
HFQ_SALEP - RNA-binding protein Hfq OS=Salmonella enteritidis PT4 (strain P125109) GN=hfq PE=3 SV=1
gi|213023503 - gi|213023503|ref|ZP_03337950.1| RNA-binding protein Hfq [Salmonella enterica subsp. enterica serovar...
HFQ_SALA4 - RNA-binding protein Hfq OS=Salmonella agona (strain SL483) GN=hfq PE=3 SV=1
HFQ_SALPA - Protein hfq OS=Salmonella paratyphi A GN=hfq PE=3 SV=1
gi|197261963, gi... - gi|197261963|ref|ZP_03162037.1| RNA chaperone Hfq [Salmonella enterica subsp. enterica serovar Saint...
HFQ_SALPK - RNA-binding protein Hfq OS=Salmonella paratyphi A (strain AKU_12601) GN=hfq PE=3 SV=1
HFQ_SALDC - RNA-binding protein Hfq OS=Salmonella dublin (strain CT_02021853) GN=hfq PE=3 SV=1
gi|168822512, gi... - gi|205341071|gb|EDZ27835.1| RNA chaperone Hfq [Salmonella enterica subsp. enterica serovar Weltevred...
HFQ_SALNS - RNA-binding protein Hfq OS=Salmonella newport (strain SL254) GN=hfq PE=3 SV=1
gi|194471437, gi... - gi|194471437|ref|ZP_03077421.1| RNA chaperone Hfq [Salmonella enterica subsp. enterica serovar Kentu...
HFQ_SALSV - RNA-binding protein Hfq OS=Salmonella schwarzengrund (strain CVM19633) GN=hfq PE=3 SV=1
gi|238910519 - gi|238910519|ref|ZP_04654356.1| RNA-binding protein Hfq [Salmonella enterica subsp. enterica serovar...
HFQ_SALPC - RNA-binding protein Hfq OS=Salmonella paratyphi C (strain RKS4594) GN=hfq PE=3 SV=1
lcl|NC_016856.1_... - [gene=hfq] [protein=RNA-binding protein Hfq] [protein_id=YP_005240673.1] [location=4617406..4617714]
gi|213612848 - gi|213612848|ref|ZP_03370674.1| RNA-binding protein Hfq [Salmonella enterica subsp. enterica serovar...
gi|213648969 - gi|213648969|ref|ZP_03379022.1| RNA-binding protein Hfq [Salmonella enterica subsp. enterica serovar...
gi|213852839 - gi|213852839|ref|ZP_03382371.1| RNA-binding protein Hfq [Salmonella enterica subsp. enterica serovar...
gi|214003359 - gi|214003359|ref|ZP_03414094.1| RNA-binding protein Hfq [Salmonella enterica subsp. enterica serovar...
HFQ_SALPB - RNA-binding protein Hfq OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=hfq PE=3 SV=1
HFQ_SALTI - RNA-binding protein Hfq OS=Salmonella typhi GN=hfq PE=3 SV=2
HFQ_SALTI - Protein hfq OS=Salmonella typhi GN=hfq PE=3 SV=2
gi|29140298, gi|... - gi|29144659|ref|NP_808001.1| RNA-binding protein Hfq [Salmonella enterica subsp. enterica serovar Ty...
HFQ_SALTY - RNA-binding protein Hfq OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=hfq PE=1 ...
gi|16763180 - gi|16763180|ref|NP_458797.1| RNA-binding protein Hfq [Salmonella enterica subsp. enterica serovar Ty...
HFQ_SALPA - RNA-binding protein Hfq OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=hfq PE=3 SV=1
HFQ_SALTY - Protein hfq OS=Salmonella typhimurium GN=hfq PE=1 SV=2
HFQ_SALTY - Protein hfq OS=Salmonella typhimurium GN=hfq PE=1 SV=2
150.0 [0..1] [101..1]
HFQ_ECOLC - RNA-binding protein Hfq OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=hfq PE=3 SV=1
EG10438 - global sRNA chaperone; HF-I, host factor for RNA phage Q beta replication / Global regulator of sRNA...
HFQ_ESCF3 - RNA-binding protein Hfq OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=h...
gi|217321789, gi... - gi|217325568|ref|ZP_03441652.1| RNA chaperone Hfq [Escherichia coli O157:H7 str. TW14588], gi|217321...
gi|85676923, gi|... - gi|89110892|ref|AP_004672.1| HF-I, host factor for RNA phage Q beta replication [Escherichia coli st...
HFQ_ECO45 - RNA-binding protein Hfq OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=hfq PE=3 SV=1
HFQ_SHIBS - RNA-binding protein Hfq OS=Shigella boydii serotype 4 (strain Sb227) GN=hfq PE=3 SV=1
HFQ_ECOUT - RNA-binding protein Hfq OS=Escherichia coli (strain UTI89 / UPEC) GN=hfq PE=3 SV=1
HFQ_ECO8A - RNA-binding protein Hfq OS=Escherichia coli O8 (strain IAI1) GN=hfq PE=3 SV=1
HFQ_ECO55 - RNA-binding protein Hfq OS=Escherichia coli (strain 55989 / EAEC) GN=hfq PE=3 SV=1
HFQ_ECO81 - RNA-binding protein Hfq OS=Escherichia coli O81 (strain ED1a) GN=hfq PE=3 SV=1
HFQ_ECOK1 - RNA-binding protein Hfq OS=Escherichia coli O1:K1 / APEC GN=hfq PE=3 SV=1
gi|227836358, gi... - gi|227886785|ref|ZP_04004590.1| host factor I [Escherichia coli 83972], gi|227836358|gb|EEJ46824.1| ...
gi|124528231, gi... - gi|124528231|ref|ZP_01699555.1| RNA chaperone Hfq [Escherichia coli B], gi|124500673|gb|EAY48143.1| ...
HFQ_ECO7I - RNA-binding protein Hfq OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=hfq PE=3 SV=1
gi|237703839, gi... - gi|237703839|ref|ZP_04534320.1| host factor I for bacteriophage Q beta replication [Escherichia sp. ...
gi|191174520, gi... - gi|75236175|ref|ZP_00720297.1| COG1923: Uncharacterized host factor I protein [Escherichia coli F11]...
gi|126143548 - gi|126143548|dbj|BAF47288.1| Hfq protein [Shigella sonnei]
gi|195935962 - gi|195935962|ref|ZP_03081344.1| RNA-binding protein Hfq [Escherichia coli O157:H7 str. EC4024]
HFQ_ECOBW - RNA-binding protein Hfq OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=hfq PE=3 SV=1
gi|75234279, gi|... - gi|75234279|ref|ZP_00718667.1| COG1923: Uncharacterized host factor I protein [Escherichia coli E110...
gi|194434571, gi... - gi|194434571|ref|ZP_03066828.1| RNA chaperone Hfq [Shigella dysenteriae 1012], gi|194417156|gb|EDX33...
gi|251787421, gi... - gi|251787421|ref|YP_003001725.1| hypothetical protein B21_04001 [Escherichia coli BL21], gi|24237969...
gi|75231235, gi|... - gi|75231235|ref|ZP_00717642.1| COG1923: Uncharacterized host factor I protein [Escherichia coli B7A]...
gi|208735780, gi... - gi|208814503|ref|ZP_03255832.1| RNA chaperone Hfq [Escherichia coli O157:H7 str. EC4045], gi|2087357...
gi|253326247, gi... - gi|254290851|ref|YP_003056599.1| RNA-binding protein Hfq [Escherichia coli BL21(DE3)], gi|253980158|...
gi|194426632, gi... - gi|75212279|ref|ZP_00712319.1| COG1923: Uncharacterized host factor I protein [Escherichia coli B171...
gi|208726606, gi... - gi|208806805|ref|ZP_03249142.1| RNA chaperone Hfq [Escherichia coli O157:H7 str. EC4206], gi|2087266...
gi|226840292, gi... - gi|254037186|ref|ZP_04871263.1| hfq protein [Escherichia sp. 1_1_43], gi|226840292|gb|EEH72294.1| hf...
HFQ_SHISS - RNA-binding protein Hfq OS=Shigella sonnei (strain Ss046) GN=hfq PE=3 SV=1
gi|15834402, gi|... - gi|15834402|ref|NP_313175.1| RNA-binding protein Hfq [Escherichia coli O157:H7 str. Sakai], gi|13364...
HFQ_ECO5E - RNA-binding protein Hfq OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=hfq PE=3 SV=1
gi|254164101, gi... - gi|254164101|ref|YP_003047209.1| RNA-binding protein Hfq [Escherichia coli B str. REL606], gi|253976...
HFQ_ECOL6 - Protein hfq OS=Escherichia coli O6 GN=hfq PE=3 SV=2
HFQ_ECOL5 - RNA-binding protein Hfq OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=hfq PE=3 SV=1
gi|208739508, gi... - gi|208819385|ref|ZP_03259705.1| RNA chaperone Hfq [Escherichia coli O157:H7 str. EC4042], gi|2087395...
gi|254595591, gi... - gi|254796191|ref|YP_003081028.1| host factor I for bacteriophage Q beta replication, a growth-relate...
gi|75515411, gi|... - gi|75515411|ref|ZP_00737568.1| COG1923: Uncharacterized host factor I protein [Escherichia coli 5363...
HFQ_SHIF8 - RNA-binding protein Hfq OS=Shigella flexneri serotype 5b (strain 8401) GN=hfq PE=3 SV=1
HFQ_ECO27 - RNA-binding protein Hfq OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=hfq PE=3 SV=1
gi|192926336, gi... - gi|75255899|ref|ZP_00727631.1| COG1923: Uncharacterized host factor I protein [Escherichia coli E22]...
HFQ_ECOSE - RNA-binding protein Hfq OS=Escherichia coli (strain SE11) GN=hfq PE=3 SV=1
HFQ_SHIFL - RNA-binding protein Hfq OS=Shigella flexneri GN=hfq PE=3 SV=2
HFQ_ECOLI - Protein hfq (Host factor-I protein) (HF-I) (HF-1) - Escherichia coli
gi|24115527, gi|... - gi|24115527|ref|NP_710037.1| RNA-binding protein Hfq [Shigella flexneri 2a str. 301], gi|24054855|gb...
HFQ_ECOL6 - RNA-binding protein Hfq OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=hfq PE=3 S...
gi|30043808, gi|... - gi|30065544|ref|NP_839715.1| RNA-binding protein Hfq [Shigella flexneri 2a str. 2457T], gi|30043808|...
HFQ_ECOHS - RNA-binding protein Hfq OS=Escherichia coli O9:H4 (strain HS) GN=hfq PE=3 SV=1
HFQ_ECO57 - RNA-binding protein Hfq OS=Escherichia coli O157:H7 GN=hfq PE=3 SV=2
HFQ_ECO24 - RNA-binding protein Hfq OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=hfq PE=3 SV=1
EG10438 - global sRNA chaperone; HF-I, host factor for RNA phage Q beta replication / Global regulator of sRNA...
gi|194421514, gi... - gi|83585090|ref|ZP_00923743.1| COG1923: Uncharacterized host factor I protein [Escherichia coli 101-...
gi|12519157, gi|... - gi|15804761|ref|NP_290802.1| RNA-binding protein Hfq [Escherichia coli O157:H7 EDL933], gi|12519157|...
sp|B7UQI1|HFQ_ECO27 - Protein hfq OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=hfq PE=3 SV=1
gi|168766449, gi... - gi|189363952|gb|EDU82371.1| RNA chaperone Hfq [Escherichia coli O157:H7 str. EC4486], gi|168766449|r...
gi|168760411, gi... - gi|189368893|gb|EDU87309.1| RNA chaperone Hfq [Escherichia coli O157:H7 str. EC4501], gi|168760411|r...
gi|168780602, gi... - gi|189001835|gb|EDU70821.1| RNA chaperone Hfq [Escherichia coli O157:H7 str. EC4076], gi|168780602|r...
gi|168774117, gi... - gi|187770223|gb|EDU34067.1| RNA chaperone Hfq [Escherichia coli O157:H7 str. EC4196], gi|168774117|r...
gi|189376091, gi... - gi|189376091|gb|EDU94507.1| RNA chaperone Hfq [Escherichia coli O157:H7 str. EC508], gi|168801825|re...
gi|168784807, gi... - gi|189374845|gb|EDU93261.1| RNA chaperone Hfq [Escherichia coli O157:H7 str. EC869], gi|168784807|re...
HFQ_ECOSM - RNA-binding protein Hfq OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=hfq PE=3 SV=1
HFQ_ECODH - RNA-binding protein Hfq OS=Escherichia coli (strain K12 / DH10B) GN=hfq PE=3 SV=1
gi|189357810, gi... - gi|189357810|gb|EDU76229.1| RNA chaperone Hfq [Escherichia coli O157:H7 str. EC4401], gi|168754741|r...
gi|168751478, gi... - gi|188014498|gb|EDU52620.1| RNA chaperone Hfq [Escherichia coli O157:H7 str. EC4113], gi|168751478|r...
150.0 [0..1] [101..1]
HFQ_SHIB3 - RNA-binding protein Hfq OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=hfq PE=3 SV=1
149.0 [0..1] [101..1]
HFQ_SALG2 - RNA-binding protein Hfq OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=hfq PE=3 SV=1
HFQ_SALCH - Protein hfq OS=Salmonella choleraesuis GN=hfq PE=3 SV=1
HFQ_SALCH - Protein hfq OS=Salmonella choleraesuis GN=hfq PE=3 SV=1
HFQ_SALCH - RNA-binding protein Hfq OS=Salmonella choleraesuis (strain SC-B67) GN=hfq PE=3 SV=1
149.0 [0..1] [101..1]
HFQ_PECAS - RNA-binding protein Hfq OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=hfq PE=3...
HFQ_ERWCT - Protein hfq OS=Erwinia carotovora subsp. atroseptica GN=hfq PE=3 SV=1
gi|255055752, gi... - gi|255055752|ref|ZP_05307980.1| RNA chaperone Hfq [Pectobacterium wasabiae WPP163], gi|254988421|gb|...
147.0 [0..1] [101..1]

Back

Predicted Domain #1
Region A:
Residues: [1-101]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKGQSLQDP FLNALRRERV PVSIYLVNGI KLQGQVESFD QFVILLKNTV SQMVYKHAIS  60
   61 TVVPSRPVSH HSNNPSGSTN NYHGSNPSAP QQPQQDSDDA E

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.0
Match: 1u1sA
Description: Hfq protein from Pseudomonas aeruginosa. Low-salt crystals
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
3.35169246976368 bayes_pls_golite062009
RNA binding 2.84369313702118 bayes_pls_golite062009
nucleic acid binding 2.17610586699691 bayes_pls_golite062009
binding 1.3000279455998 bayes_pls_golite062009
catalytic activity 0.312834499620126 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle