YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|167427248
Organism: Callithrix jacchus
Length: 194 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167427248.

Description E-value Query
Range		 Subject
Range
gi|63191647 - gi|63191647|gb|AAY34785.1| small ribosomal protein subunit 4 [Leskeadelphus bolivianus]
 1.0E-60 [13..194] [1..183]
gi|63191649 - gi|63191649|gb|AAY34786.1| small ribosomal protein subunit 4 [Lindbergia brachyptera]
 3.0E-60 [13..194] [1..183]
gi|63191651 - gi|63191651|gb|AAY34787.1| small ribosomal protein subunit 4 [Pseudoleskeella tectorum]
 3.0E-60 [13..194] [1..183]
gi|18920743 - gi|18920743|gb|AAL82416.1| ribosomal protein system 4 [Herzogiella striatella]
 4.0E-60 [23..193] [1..177]
gi|29422405 - gi|29422405|gb|AAO84598.1| small ribosomal protein 4 [Breutelia chrysocoma]
 6.0E-60 [13..193] [2..183]
gi|47606918 - gi|47606918|gb|AAT36379.1| ribosomal protein subunit 4 [Pohlia nutans]
 6.0E-60 [13..194] [1..183]
gi|3098186 - gi|3098186|gb|AAC15541.1| small ribosomal protein 4 [Mnium hornum]
 7.0E-60 [13..194] [1..183]
gi|3098150 - gi|3098150|gb|AAC15523.1| small ribosomal protein 4 [Bryobrittonia longipes]
 9.0E-60 [22..193] [2..179]
gi|67035598 - gi|67035598|gb|AAY62730.1| small ribosomal protein subunit 4 [Bryoxiphium norvegicum]
 9.0E-60 [12..194] [3..186]
gi|67035600 - gi|67035600|gb|AAY62731.1| small ribosomal protein subunit 4 [Micromitrium austinii]
 1.0E-59 [31..193] [1..171]

Back

Predicted Domain #1
Region A:
Residues: [1-194] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVARSWVCR KTYVTPRRPF EKSRLDQELK LIGEYGLRNK REVWRVKFTL AKIRKAAREL  60
   61 LTLDEKDPRR LFEGNALLRR LVRIGVLDEG KMKLDYILGL KIEDFLERRL QTQVFKLGLA 120
  121 KSIHHARVLI RQRHIRVRKQ VVNIPSFIVR LDSQKHIDFS LRSPYGGGRP GRVKRKNAKK 180
  181 GQGGAGAGDD EEED

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.69897
Match: 1s1hD
Description: Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle