YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|31616032, gi\|...
Organism:	Escherichia coli
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|31616032, gi|....

Description	E-value	Query Range	Subject Range
gi\|170683531, gi... - gi\|170683531\|ref\|YP_001744944.1\| pemK protein 1 [Escherichia coli SMS-3-5], gi\|170521249\|gb\|ACB19427... gi\|215266171, gi... - gi\|215488099\|ref\|YP_002330530.1\| toxin ChpA [Escherichia coli O127:H6 str. E2348/69], gi\|215266171\|e... gi\|218366539, gi... - gi\|218559770\|ref\|YP_002392683.1\| toxin ChpA [Escherichia coli S88], gi\|218366539\|emb\|CAR04292.1\| tox... gi\|218428469, gi... - gi\|218690905\|ref\|YP_002399117.1\| toxin ChpA [Escherichia coli ED1a], gi\|218428469\|emb\|CAR09395.2\| to... gi\|115514135, gi... - gi\|117625011\|ref\|YP_853999.1\| toxin ChpA [Escherichia coli APEC O1], gi\|115514135\|gb\|ABJ02210.1\| pro... gi\|226899630, gi... - gi\|237706590\|ref\|ZP_04537071.1\| toxin ChpA [Escherichia sp. 3_2_53FAA], gi\|226899630\|gb\|EEH85889.1\| ... gi\|91073722, gi\|... - gi\|91212148\|ref\|YP_542134.1\| toxin ChpA [Escherichia coli UTI89], gi\|91073722\|gb\|ABE08603.1\| probabl...	132.0	[0..1]	[110..2]
EG11249 - mRNA interferase toxin, antitoxin is MazE / mRNA interferase toxin, antitoxin is MazE; inhibitor of ... gi\|237871517 - gi\|237871517\|gb\|ACR26202.1\| MazF [Delivery vector PDGREF] gi\|86278334 - gi\|86278334\|gb\|ABC88418.1\| MazF [Delivery vector pIEF16S] gi\|208812117, gi... - gi\|208812117\|ref\|ZP_03253446.1\| pemK protein 1 [Escherichia coli O157:H7 str. EC4045], gi\|208733394\|... gi\|13363113, gi\|... - gi\|15832896\|ref\|NP_311669.1\| toxin ChpA [Escherichia coli O157:H7 str. Sakai], gi\|13363113\|dbj\|BAB37... gi\|208726322, gi... - gi\|208806521\|ref\|ZP_03248858.1\| pemK protein 1 [Escherichia coli O157:H7 str. EC4206], gi\|208726322\|... gi\|209162051, gi... - gi\|209400651\|ref\|YP_002272247.1\| pemK protein 1 [Escherichia coli O157:H7 str. EC4115], gi\|209162051... gi\|208821798, gi... - gi\|208821798\|ref\|ZP_03262118.1\| pemK protein 1 [Escherichia coli O157:H7 str. EC4042], gi\|208741921\|... gi\|218371484, gi... - gi\|218701498\|ref\|YP_002409127.1\| toxin ChpA [Escherichia coli IAI39], gi\|218371484\|emb\|CAR19320.1\| t... gi\|217320036, gi... - gi\|217327669\|ref\|ZP_03443752.1\| pemK protein 1 [Escherichia coli O157:H7 str. TW14588], gi\|217320036... gi\|86278328 - gi\|86278328\|gb\|ABC88413.1\| MazF [Delivery vector pDGIEF] gi\|94540630 - gi\|94540630\|gb\|ABF31009.1\| MazF [Delivery vector pIEFBPR] gi\|85675601, gi\|... - gi\|89109568\|ref\|AP_003348.1\| toxin of the ChpA-ChpR toxin-antitoxin system, endoribonuclease [Escher... gi\|82778164, gi\|... - gi\|82778164\|ref\|YP_404513.1\| toxin ChpA [Shigella dysenteriae Sd197], gi\|81242312\|gb\|ABB63022.1\| pro... gi\|73856831, gi\|... - gi\|74313354\|ref\|YP_311773.1\| toxin ChpA [Shigella sonnei Ss046], gi\|73856831\|gb\|AAZ89538.1\| probable... gi\|124532111, gi... - gi\|124532111\|ref\|ZP_01702110.1\| transcriptional modulator of MazE/toxin, MazF [Escherichia coli B], ... gi\|75511925, gi\|... - gi\|75511925\|ref\|ZP_00734528.1\| COG2337: Growth inhibitor [Escherichia coli 53638], gi\|188495196\|ref\|... gi\|192955571, gi... - gi\|75233992\|ref\|ZP_00718441.1\| COG2337: Growth inhibitor [Escherichia coli E110019], gi\|193071110\|re... gi\|75196753, gi\|... - gi\|75196753\|ref\|ZP_00706823.1\| COG2337: Growth inhibitor [Escherichia coli HS], gi\|157162236\|ref\|YP_... gi\|168768878, gi... - gi\|189362093\|gb\|EDU80512.1\| pemK protein 1 [Escherichia coli O157:H7 str. EC4486], gi\|168768878\|ref\|... gi\|189364848, gi... - gi\|189364848\|gb\|EDU83264.1\| pemK protein 1 [Escherichia coli O157:H7 str. EC4501], gi\|168765463\|ref\|... gi\|189003234, gi... - gi\|189003234\|gb\|EDU72220.1\| pemK protein 1 [Escherichia coli O157:H7 str. EC4076], gi\|168778770\|ref\|... gi\|168778018, gi... - gi\|187766883\|gb\|EDU30727.1\| pemK protein 1 [Escherichia coli O157:H7 str. EC4196], gi\|168778018\|ref\|... MAZF_ECO57 - Endoribonuclease MazF OS=Escherichia coli O157:H7 GN=mazF PE=3 SV=1 gi\|169890189, gi... - gi\|170082354\|ref\|YP_001731674.1\| toxin of the ChpA-ChpR toxin-antitoxin system, endoribonuclease [Es... EG11249 - mRNA interferase toxin, antitoxin is MazE / mRNA interferase toxin, antitoxin is MazE; inhibitor of ... gi\|168788040, gi... - gi\|189372171\|gb\|EDU90587.1\| pemK protein 1 [Escherichia coli O157:H7 str. EC869], gi\|168788040\|ref\|Z... gi\|15803303, gi\|... - gi\|15803303\|ref\|NP_289336.1\| toxin ChpA [Escherichia coli O157:H7 EDL933], gi\|12517254\|gb\|AAG57895.1... gi\|195936384 - gi\|195936384\|ref\|ZP_03081766.1\| toxin ChpA [Escherichia coli O157:H7 str. EC4024] gi\|194434695, gi... - gi\|194434695\|ref\|ZP_03066949.1\| pemK protein 1 [Shigella dysenteriae 1012], gi\|194417092\|gb\|EDX33207... CHPA_ECOLI - PemK-like protein 1 (Protein mazF) - Escherichia coli gi\|238901918, gi... - gi\|238901918\|ref\|YP_002927714.1\| toxin of the ChpA-ChpR toxin-antitoxin system, endoribonuclease [Es... gi\|242378329, gi... - gi\|251786056\|ref\|YP_003000360.1\| hypothetical protein B21_02589 [Escherichia coli BL21], gi\|24237832... gi\|254289467, gi... - gi\|254289467\|ref\|YP_003055215.1\| toxin of the ChpA-ChpR toxin-antitoxin system, endoribonuclease [Es... gi\|254037832, gi... - gi\|254037832\|ref\|ZP_04871890.1\| pemK protein 1 [Escherichia sp. 1_1_43], gi\|226839456\|gb\|EEH71477.1\|... gi\|253974609, gi... - gi\|254162708\|ref\|YP_003045816.1\| toxin of the ChpA-ChpR toxin-antitoxin system, endoribonuclease [Es... gi\|189354705, gi... - gi\|189354705\|gb\|EDU73124.1\| pemK protein 1 [Escherichia coli O157:H7 str. EC4401], gi\|168758473\|ref\|... gi\|254794724, gi... - gi\|254794724\|ref\|YP_003079561.1\| toxin of the ChpA-ChpR toxin-antitoxin system, endoribonuclease [Es...	132.0	[0..1]	[110..2]
gi\|167036913, gi... - gi\|76796513\|ref\|ZP_00778873.1\| PemK-like protein [Thermoanaerobacter ethanolicus ATCC 33223], gi\|765... gi\|167039618, gi... - gi\|167039618\|ref\|YP_001662603.1\| transcriptional modulator of MazE/toxin, MazF [Thermoanaerobacter s... gi\|242230427, gi... - gi\|242258050\|ref\|ZP_04802887.1\| transcriptional modulator of MazE/toxin, MazF [Thermoanaerobacter sp... gi\|241903946, gi... - gi\|241903946\|ref\|ZP_04788660.1\| transcriptional modulator of MazE/toxin, MazF [Thermoanaerobacter br...	132.0	[0..4]	[110..1]
gi\|58000729, gi\|... - gi\|58038315\|ref\|YP_190284.1\| toxin ChpA [Gluconobacter oxydans 621H], gi\|58000729\|gb\|AAW59628.1\| Pem...	132.0	[0..1]	[110..1]
gi\|194439656, gi... - gi\|83584962\|ref\|ZP_00923618.1\| COG2337: Growth inhibitor [Escherichia coli 101-1], gi\|194439656\|ref\|...	131.0	[0..1]	[110..2]
gi\|20808550 - gi\|20808550\|ref\|NP_623721.1\| Growth inhibitor [Thermoanaerobacter tengcongensis MB4] gi\|20517176, gi\|... - gi\|20808550\|ref\|NP_623721.1\| growth inhibitor [Thermoanaerobacter tengcongensis MB4], gi\|20517176\|gb...	131.0	[0..2]	[110..1]
gi\|218362101, gi... - gi\|218555333\|ref\|YP_002388246.1\| toxin ChpA [Escherichia coli IAI1], gi\|218362101\|emb\|CAQ99710.1\| to... gi\|157159087, gi... - gi\|75187510\|ref\|ZP_00700777.1\| COG2337: Growth inhibitor [Escherichia coli E24377A], gi\|157159087\|re... gi\|218353113, gi... - gi\|218696381\|ref\|YP_002404048.1\| toxin ChpA [Escherichia coli 55989], gi\|218353113\|emb\|CAU98940.1\| t... gi\|209913490, gi... - gi\|209920231\|ref\|YP_002294315.1\| toxin ChpA [Escherichia coli SE11], gi\|209913490\|dbj\|BAG78564.1\| pu...	131.0	[0..1]	[110..2]
gi\|110642923, gi... - gi\|110642923\|ref\|YP_670653.1\| toxin ChpA [Escherichia coli 536], gi\|110344515\|gb\|ABG70752.1\| PemK-li... gi\|190908568, gi... - gi\|75241828\|ref\|ZP_00725647.1\| COG2337: Growth inhibitor [Escherichia coli F11], gi\|191171268\|ref\|ZP...	129.0	[0..1]	[110..2]
gi\|88792332, gi\|... - gi\|88810702\|ref\|ZP_01125959.1\| transcriptional modulator of MazE/toxin, MazF [Nitrococcus mobilis Nb...	129.0	[0..2]	[109..4]
gi\|187730280, gi... - gi\|75176356\|ref\|ZP_00696500.1\| COG2337: Growth inhibitor [Shigella boydii BS512], gi\|187730280\|ref\|Y... gi\|81246492, gi\|... - gi\|82545081\|ref\|YP_409028.1\| toxin ChpA [Shigella boydii Sb227], gi\|81246492\|gb\|ABB67200.1\| ChpA [Sh...	129.0	[0..1]	[110..2]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSRYVPDMGD LIWVDFDPTK GSEQAGHRPA VVLSPFMYNN KTGMCLCVPC TTQSKGYPFE  60
   61 VVLSGQERDG VALADQVKSI AWRARGATKK GTVAPEELQL IKAKINVLIG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.0
Match:	1ub4A
Description:	MazF protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits