YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|31615674
Organism:	Homo sapiens
Length:	193 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|31615674.

Description	E-value	Query Range	Subject Range
gi\|109066344 - gi\|109066344\|ref\|XP_001084055.1\| PREDICTED: neutrophil cytosolic factor 1 [Macaca mulatta]	164.0	[0..8]	[193..155]
NCF1_MOUSE - Neutrophil cytosol factor 1 OS=Mus musculus GN=Ncf1 PE=1 SV=2	164.0	[0..8]	[193..155]
NCF1 - neutrophil cytosolic factor 1, (chronic granulomatous disease, autosomal 1) gi\|114614035 - gi\|114614035\|ref\|XP_001152639.1\| PREDICTED: neutrophil cytosolic factor 1 isoform 4 [Pan troglodytes...	163.0	[0..8]	[193..155]
gi\|31616034 - gi\|31616034\|pdb\|1UEC\|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3 Domain Of P47p...	162.0	[0..8]	[193..8]
gi\|61368148, gi\|... - gi\|61368148\|gb\|AAX43114.1\| neutrophil cytosolic factor 1 [synthetic construct], gi\|54695778\|gb\|AAV38...	162.0	[0..8]	[193..155]
gi\|38511554, gi\|... - gi\|40254742\|ref\|NP_446186.2\| neutrophil cytosolic factor 1 [Rattus norvegicus], gi\|38511554\|gb\|AAH61...	161.0	[0..8]	[193..155]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPLGSPEFII LQTYRAIADY EKTSGSEMAL STGDVVEVVE KSESGWWFCQ MKAKRGWIPA  60
   61 SFLEPLDSPD ETEDPEPNYA GEPYVAIKAY TAVEGDEVSL LEGEAVEVIH KLLDGWWVIR 120
  121 KDDVTGYFPS MYLQKSGQDV SQAQRQIKRG APPRRSSIRN AHSIHQRSRK RLSQDAYRRN 180
  181 SVRFLQQRRR QAR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.221849
Match:	1ng2A
Description:	p47pox (neutrophil cytosolic factor 1)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.375837873453985	bayes_pls_golite062009
protein binding	0.25580402341401	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: