YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30749465
Organism:	Homo sapiens
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30749465.

Description	E-value	Query Range	Subject Range
gi\|50730959 - gi\|50730959\|ref\|XP_417099.1\| PREDICTED: similar to doublecortin-like kinase [Gallus gallus]	189.0	[0..3]	[113..44]
gi\|76668033 - gi\|76668033\|ref\|XP_616231.2\| PREDICTED: similar to doublecortin kinase 2 [Bos taurus]	186.0	[0..3]	[113..59]
gi\|114649473 - gi\|114649473\|ref\|XP_522657.2\| PREDICTED: doublecortin and CaM kinase-like 1 [Pan troglodytes]	185.0	[0..3]	[113..187]
CCDS9354.1_1 - null ENSPTRT00000010634 - null ENSMMUG000000167... - null, null gi\|55959718, gi\|... - gi\|55959718\|emb\|CAI15720.1\| doublecortin and CaM kinase-like 1 [Homo sapiens], gi\|55661763\|emb\|CAH70... gi\|168272972, gi... - gi\|182888295\|gb\|AAI60043.1\| Doublecortin-like kinase 1 [synthetic construct], gi\|168272972\|dbj\|BAG10...	185.0	[0..3]	[113..44]
gi\|56269660 - gi\|56269660\|gb\|AAV85464.1\| doublecortin kinase-2 [Rattus norvegicus]	185.0	[0..3]	[113..59]
gi\|26349831 - gi\|26349831\|dbj\|BAC38555.1\| unnamed protein product [Mus musculus]	184.0	[0..3]	[113..59]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAMDPEFTLS SEKKAKKVRF YRNGDRYFKG IVYAISPDRF RSFEALLADL TRTLSDNVNL  60
   61 PQGVRTIYTI DGLKKISSLD QLVEGESYVC GSIEPFKKLE YTKNVNPNWS VNV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.39794
Match:	1mg4A
Description:	Doublecortin-like kinase Dclk
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits