YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30749314
Organism:	Escherichia coli
Length:	94 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30749314.

Description	E-value	Query Range	Subject Range
DNAA_SACD2 - Chromosomal replication initiator protein DnaA OS=Saccharophagus degradans (strain 2-40 / ATCC 43961...	142.0	[0..1]	[94..431]
gi\|30043271, gi\|... - gi\|30065010\|ref\|NP_839181.1\| chromosomal replication initiation protein [Shigella flexneri 2a str. 2...	142.0	[0..1]	[94..374]
DNAA_PHOLL - Chromosomal replication initiator protein DnaA OS=Photorhabdus luminescens subsp. laumondii (strain ... DNAA_PHOLL - Chromosomal replication initiator protein dnaA OS=Photorhabdus luminescens subsp. laumondii GN=dnaA ...	141.0	[0..1]	[94..369]
gi\|110807608, gi... - gi\|110807608\|ref\|YP_691128.1\| chromosomal replication initiation protein [Shigella flexneri 5 str. 8...	141.0	[0..1]	[94..350]
DNAA_SHIDS - Chromosomal replication initiator protein DnaA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=...	141.0	[0..1]	[94..374]
DNAA_ECOUT - Chromosomal replication initiator protein DnaA OS=Escherichia coli (strain UTI89 / UPEC) GN=dnaA PE=... gi\|192957474, gi... - gi\|193069150\|ref\|ZP_03050107.1\| chromosomal replication initiator protein DnaA [Escherichia coli E11... gi\|192930514, gi... - gi\|193063799\|ref\|ZP_03044886.1\| chromosomal replication initiator protein DnaA [Escherichia coli E22... gi\|190909255, gi... - gi\|191170447\|ref\|ZP_03032000.1\| chromosomal replication initiator protein DnaA [Escherichia coli F11... gi\|190904098, gi... - gi\|191165774\|ref\|ZP_03027612.1\| chromosomal replication initiator protein DnaA [Escherichia coli B7A... sp\|B7UMG9\|DNAA_ECO27 - Chromosomal replication initiator protein DnaA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) ... DNAA_ECOSE - Chromosomal replication initiator protein DnaA OS=Escherichia coli (strain SE11) GN=dnaA PE=3 SV=1 gi\|194425233, gi... - gi\|194435690\|ref\|ZP_03067793.1\| chromosomal replication initiator protein DnaA [Escherichia coli 101... gi\|194420758, gi... - gi\|194431303\|ref\|ZP_03063596.1\| chromosomal replication initiator protein DnaA [Shigella dysenteriae... gi\|194413812, gi... - gi\|194428054\|ref\|ZP_03060598.1\| chromosomal replication initiator protein DnaA [Escherichia coli B17... gi\|188495189, gi... - gi\|188495189\|ref\|ZP_03002459.1\| chromosomal replication initiator protein DnaA [Escherichia coli 536... DNAA_ECOSM - Chromosomal replication initiator protein DnaA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=dnaA ... DNAA_ECOLI - Chromosomal replication initiator protein dnaA - Escherichia coli DNAA_SHISS - Chromosomal replication initiator protein DnaA OS=Shigella sonnei (strain Ss046) GN=dnaA PE=3 SV=1 gi\|85676342, gi\|... - gi\|89110311\|ref\|AP_004091.1\| chromosomal replication initiator protein DnaA, DNA-binding transcripti... DNAA_ECOHS - Chromosomal replication initiator protein DnaA OS=Escherichia coli O9:H4 (strain HS) GN=dnaA PE=3 SV... EG10235 - chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator / DNA syn... DNAA_ECO24 - Chromosomal replication initiator protein DnaA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) ... EG10235 - chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator / DNA syn... DNAA_ECO81 - Chromosomal replication initiator protein DnaA OS=Escherichia coli O81 (strain ED1a) GN=dnaA PE=3 SV... DNAA_ECO45 - Chromosomal replication initiator protein DnaA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=dn... DNAA_ECO8A - Chromosomal replication initiator protein DnaA OS=Escherichia coli O8 (strain IAI1) GN=dnaA PE=3 SV=... DNAA_ECO27 - Chromosomal replication initiator protein DnaA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) ... DNAA_ECOLU - Chromosomal replication initiator protein DnaA OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPE... DNAA_ECO7I - Chromosomal replication initiator protein DnaA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=d... DNAA_ECO55 - Chromosomal replication initiator protein DnaA OS=Escherichia coli (strain 55989 / EAEC) GN=dnaA PE=... DNAA_ECOBW - Chromosomal replication initiator protein DnaA OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN... gi\|237703502, gi... - gi\|237703502\|ref\|ZP_04533983.1\| chromosomal replication initiation protein [Escherichia sp. 3_2_53FA... gi\|254290403, gi... - gi\|254290403\|ref\|YP_003056151.1\| chromosomal replication initiation protein [Escherichia coli BL21(D... gi\|242379241, gi... - gi\|251786968\|ref\|YP_003001272.1\| hypothetical protein B21_03529 [Escherichia coli BL21], gi\|24237924... gi\|253975554, gi... - gi\|254163653\|ref\|YP_003046761.1\| chromosomal replication initiation protein [Escherichia coli B str.... gi\|254038919, gi... - gi\|254038919\|ref\|ZP_04872971.1\| chromosomal replication initiation protein [Escherichia sp. 1_1_43],...	141.0	[0..1]	[94..374]
tr\|A0A0G3HXH2\|A0... - Chromosomal replication initiator protein DnaA OS=Escherichia coli (strain K12) GN=dnaA PE=3 SV=2 gi\|227883923, gi... - gi\|227883923\|ref\|ZP_04001728.1\| chromosomal replication initiator protein DnaA, DNA-binding transcri... gi\|115515102, gi... - gi\|117625978\|ref\|YP_859301.1\| chromosomal replication initiation protein [Escherichia coli APEC O1],...	141.0	[0..1]	[94..378]
gi\|89074702, gi\|... - gi\|89074702\|ref\|ZP_01161160.1\| chromosomal replication initiation protein [Photobacterium sp. SKA34]...	141.0	[0..1]	[94..373]
gi\|90581124, gi\|... - gi\|90581124\|ref\|ZP_01236923.1\| chromosomal replication initiation protein [Vibrio angustum S14], gi\|...	141.0	[0..1]	[94..373]
gi\|167401560, gi... - gi\|167401560\|ref\|ZP_02307054.1\| chromosomal replication initiator protein DnaA [Yersinia pestis biov... gi\|166958243, gi... - gi\|167422851\|ref\|ZP_02314604.1\| chromosomal replication initiator protein DnaA [Yersinia pestis biov... gi\|167055492, gi... - gi\|167425478\|ref\|ZP_02317231.1\| chromosomal replication initiator protein DnaA [Yersinia pestis biov... gi\|45438598, gi\|... - gi\|45443728\|ref\|NP_995267.1\| chromosomal replication initiation protein [Yersinia pestis biovar Micr... DNAA_YERPG - Chromosomal replication initiator protein DnaA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=dna... gi\|165926099, gi... - gi\|165926099\|ref\|ZP_02221931.1\| chromosomal replication initiator protein DnaA [Yersinia pestis biov... gi\|218931074, gi... - gi\|218931074\|ref\|YP_002348949.1\| chromosomal replication initiation protein [Yersinia pestis CO92], ... gi\|166009506, gi... - gi\|166009506\|ref\|ZP_02230404.1\| chromosomal replication initiator protein DnaA [Yersinia pestis biov... DNAA_YERPS - Chromosomal replication initiator protein DnaA OS=Yersinia pseudotuberculosis serotype I (strain IP3... gi\|166205585, gi... - gi\|166213287\|ref\|ZP_02239322.1\| chromosomal replication initiator protein DnaA [Yersinia pestis biov... DNAA_YERP3 - Chromosomal replication initiator protein DnaA OS=Yersinia pseudotuberculosis serotype O:1b (strain ... gi\|149290376, gi... - gi\|150260968\|ref\|ZP_01917696.1\| chromosomal replication initiator protein [Yersinia pestis CA88-4125... DNAA_YERPP - Chromosomal replication initiator protein DnaA OS=Yersinia pestis (strain Pestoides F) GN=dnaA PE=3 ... gi\|229696170, gi... - gi\|229839804\|ref\|ZP_04459963.1\| chromosomal replication initiator protein DnaA, DNA-binding transcri... DNAA_YERPE - Chromosomal replication initiator protein DnaA OS=Yersinia pestis GN=dnaA PE=3 SV=1 gi\|229841889, gi... - gi\|229841889\|ref\|ZP_04462045.1\| chromosomal replication initiator protein DnaA, DNA-binding transcri... DNAA_YERPA - Chromosomal replication initiator protein DnaA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=dn... DNAA_YERPN - Chromosomal replication initiator protein DnaA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=d... gi\|229896766, gi... - gi\|229896766\|ref\|ZP_04511929.1\| chromosomal replication initiator protein DnaA, DNA-binding transcri... DNAA_YERPS - Chromosomal replication initiator protein DnaA OS=Yersinia pseudotuberculosis GN=dnaA PE=3 SV=1	141.0	[0..1]	[94..369]

Back

Predicted Domain #1

Region A:
Residues: [1-94]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VTIDNIQKTV AEYYKIKVAD LLSKRRSRSV ARPRQXAXAL AKELTNHSLP EIGDAFGGRD  60
   61 HTTVLHACRK IEQLREESHD IKEDFSNLIR TLSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.69897
Match:	1j1vA
Description:	Chromosomal replication initiation factor DnaA C-terminal domain IV
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits