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View Structure Prediction Details

Protein: gi|11762212, gi|...
Organism: Arabidopsis thaliana
Length: 261 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11762212, gi|....

Description E-value Query
Range
Subject
Range
gi|7485624, gi|3... - pir||T05218 hypothetical protein F17I5.90 - Arabidopsis thaliana, gi|7270339|emb|CAB80107.1| putativ...
302.0 [0..1] [234..1]

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Predicted Domain #1
Region A:
Residues: [1-184]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGALFRNAA SDAARIFRLQ RATMTNPFGK LDPLPIGGNI QRLQSRPFYR TPQFLGKAKE  60
   61 TGVSGFCSSS SSSSSTVSTA GFIGWYLGMV KSRPVLTKSV TSSLIYIAAD LSSQTIPQAS 120
  121 VDSYDLVRTA RMGGYGLLIL GPTLHYWFNL MSSLFPKRDL ITTFKKMAMG QTVYGPAMNV 180
  181 VFFS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [185-261]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNAALQGENG SEIVARLKRD LLPTMLNGVM YWPLCDFITF KFCPVYLQPL VSNSFSYLWT  60
   61 IYITYMASRA TPTAIEI

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 6.638272
Match: PF04117.3
Description: No description for PF04117.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle