YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29726700
Organism:	Homo sapiens
Length:	132 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29726700.

Description	E-value	Query Range	Subject Range
gi\|2765425 - gi\|2765425\|emb\|CAA75032.1\| immunoglobulin lambda heavy chain [Homo sapiens]	200.0	[0..5]	[131..18]
gi\|55852768 - gi\|55852768\|gb\|AAV67804.1\| modified Homo sapiens anti-Pseudomonas aeruginosa IgG1 O6ad heavy chain [...	200.0	[0..5]	[128..26]
gi\|47059057, gi\|... - gi\|47059057\|ref\|NP_997616.1\| Immunoglobulin heavy chain (gamma polypeptide) [Mus musculus], gi\|16307...	195.0	[0..5]	[132..18]
gi\|2143192 - gi\|2143192\|emb\|CAA73702.1\| immunoglobulin heavy chain [Acipenser baerii]	193.0	[0..3]	[132..16]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKSNRKDYSL TMQSSVTVQE GMCVHVRCSF SYPVDSDTDS DPVHGYWFRA GNDISWKAPV  60
   61 ATNNPAWAVQ EETRDRFHLL GDPQTKNCTL SIRDARMSDA GRYFFRMEKG NIKWNYKYDQ 120
  121 LSVNVTALTH RP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.522879
Match:	1nkoA
Description:	N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.483195558859675	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: