YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|4558186, gi\|2...
Organism:	Escherichia coli
Length:	288 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|4558186, gi|2....

Description	E-value	Query Range	Subject Range
gi\|167038831, gi... - gi\|167038831\|ref\|YP_001661816.1\| periplasmic binding protein/LacI transcriptional regulator [Thermoa... gi\|242258204, gi... - gi\|242258204\|ref\|ZP_04803030.1\| transcriptional regulator, LacI family [Thermoanaerobacter sp. X513]...	247.0	[0..2]	[286..62]
gi\|20515183, gi\|... - gi\|20806727\|ref\|NP_621898.1\| transcriptional regulator [Thermoanaerobacter tengcongensis MB4], gi\|20... gi\|20806727 - gi\|20806727\|ref\|NP_621898.1\| Transcriptional regulator [Thermoanaerobacter tengcongensis MB4] gi\|254478068, gi... - gi\|254478068\|ref\|ZP_05091451.1\| Periplasmic binding proteins and sugar binding domain of the LacI fa...	244.0	[0..2]	[286..62]
gi\|37200774, gi\|... - gi\|37676233\|ref\|NP_936629.1\| transcriptional regulator [Vibrio vulnificus YJ016], gi\|37200774\|dbj\|BA...	242.0	[0..2]	[287..61]
gi\|27366525, gi\|... - gi\|27366525\|ref\|NP_762052.1\| transcriptional regulator [Vibrio vulnificus CMCP6], gi\|27358091\|gb\|AAO...	240.0	[0..2]	[287..61]
gi\|82401152, gi\|... - gi\|82500860\|ref\|ZP_00886253.1\| regulatory protein, LacI [Caldicellulosiruptor saccharolyticus DSM 89...	239.0	[0..1]	[285..69]
gi\|91224726, gi\|... - gi\|91224726\|ref\|ZP_01259986.1\| ribose operon repressor [Vibrio alginolyticus 12G01], gi\|91190272\|gb\|...	239.0	[0..2]	[288..61]
gi\|76797419, gi\|... - gi\|76797419\|ref\|ZP_00779738.1\| regulatory protein, LacI:Periplasmic binding protein/LacI transcripti... gi\|241882990, gi... - gi\|241904637\|ref\|ZP_04789316.1\| transcriptional regulator, LacI family [Thermoanaerobacter brockii s...	237.0	[0..2]	[286..62]
gi\|51891908, gi\|... - gi\|51891908\|ref\|YP_074599.1\| LacI family transcriptional repressor [Symbiobacterium thermophilum IAM...	237.0	[0..1]	[288..58]

Back

Predicted Domain #1

Region A:
Residues: [1-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAEYAVVLKT LSNPFWVDMK KGIEDEAKTL GVSVDIFASP SEGDFQSQLQ LFEDLSNKNY  60
   61 KGIAFAPLSS VNLVMPVARA WKKGIYLVNL DEKIDMDNLK KAGGNVEAFV TTDNVAVGAK 120
  121 GASFIIDKLG AEGGEVAIIE GKAGNASGEA RRNGATEAFK KASQIKLVAS QPADWDRIKA 180
  181 LDVATNVLQR NPNIKAIYCA NDTMAMGVAQ AVANAGKTGK VLVVGTDGIP EARKMVEAGQ 240
  241 MTATVAQNPA DIGATGLKLM VDAEKSGKVI PLDKAPEFKL VDSILVTQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.154902
Match:	1gubA
Description:	D-allose-binding protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
pentose transmembrane transporter activity	2.47679209577816	bayes_pls_golite062009
D-ribose transmembrane transporter activity	2.47679209577816	bayes_pls_golite062009
D-ribose-importing ATPase activity	2.47679209577816	bayes_pls_golite062009
monosaccharide-transporting ATPase activity	2.39566008731161	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	1.15685021131727	bayes_pls_golite062009
binding	1.13059008752468	bayes_pls_golite062009
monosaccharide transmembrane transporter activity	0.53966958074777	bayes_pls_golite062009
transporter activity	0.399752289774857	bayes_pls_golite062009
transmembrane transporter activity	0.265529619623159	bayes_pls_golite062009
sugar transmembrane transporter activity	0.23981626136031	bayes_pls_golite062009
active transmembrane transporter activity	0.0415259877073471	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: