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View Structure Prediction Details

Protein: gi|28948711
Organism: Homo sapiens
Length: 97 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|28948711.

Description E-value Query
Range		 Subject
Range
gi|113535560, gi... - gi|115444499|ref|NP_001046029.1| Os02g0170500 [Oryza sativa (japonica cultivar-group)], gi|113535560...
 129.0 [0..1] [97..107]
gi|25372763, gi|... - pir||E86221 hypothetical protein [imported] - Arabidopsis thaliana, gi|1922964|gb|AAB70410.1| Simil...
 128.0 [0..2] [97..42]
gi|87240537 - gi|87240537|gb|ABD32395.1| Histone-fold/TFIID-TAF/NF-Y [Medicago truncatula]
 127.0 [0..1] [97..74]
gi|77999309 - gi|77999309|gb|ABB17001.1| unknown [Solanum tuberosum]
 127.0 [0..1] [97..84]
gi|46250701 - gi|46250701|dbj|BAD15084.1| CCAAT-box binding factor HAP5 homolog [Daucus carota]
 127.0 [0..1] [97..66]

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Predicted Domain #1
Region A:
Residues: [1-97] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSHMEEIRNL TVKDFRVQEL PLARIKKIMK LDEDVKMISA EAPVLFAKAA QIFITELTLR  60
   61 AWIHTEDNKR RTLQRNDIAM AITKFDQFDF LIDIVPR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.69897
Match: 1n1jB
Description: Nuclear transcription factor Y subunit gamma (Nf-Yc2)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.581886805340955 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle