YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|28948710
Organism:	Homo sapiens
Length:	93 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|28948710.

Description	E-value	Query Range	Subject Range
NFYB1_ARATH - Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1 SV=2	136.0	[0..1]	[93..18]
gi\|38566999 - gi\|38566999\|emb\|CAE76299.1\| probable transcription factor HAP3 [Neurospora crassa]	133.0	[0..2]	[93..43]
gi\|116181802, gi... - gi\|88185826\|gb\|EAQ93294.1\| hypothetical protein CHGG_01529 [Chaetomium globosum CBS 148.51], gi\|1161...	133.0	[0..2]	[93..42]
gi\|3152421, gi\|8... - gi\|83767937\|dbj\|BAE58076.1\| unnamed protein product [Aspergillus oryzae], gi\|3152421\|dbj\|BAA28356.1\|... gi\|169771217 - gi\|169771217\|ref\|XP_001820078.1\| hypothetical protein [Aspergillus oryzae RIB40]	133.0	[0..2]	[93..41]
gi\|14577938 - gi\|14577938\|gb\|AAK68862.1\|AF120158_1 CCAAT-binding protein subunit HAP3 [Hypocrea jecorina]	133.0	[0..2]	[93..44]
gi\|90186489 - gi\|90186489\|gb\|ABD91517.1\| transcription factory NF-YB [Salvia miltiorrhiza]	131.0	[0..1]	[93..24]
NFYB2_ORYSJ - Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp. japonica GN=NFYB2 PE=2 SV=1 NFYB2_ORYSA - Nuclear transcription factor Y subunit B-2 (OsNF-YB-2) (Transcriptional activator HAP3A) - Oryza sat...	131.0	[0..2]	[93..32]
gi\|66512023 - gi\|66512023\|ref\|XP_394667.2\| PREDICTED: similar to Nuclear transcription factor Y subunit beta (Nucl...	130.0	[0..2]	[93..67]
gi\|30409459 - gi\|30409459\|dbj\|BAC76331.1\| HAP3 [Oryza sativa Japonica Group]	130.0	[0..2]	[93..32]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFREQDIYLP IANVARIMKN AIPQTGKIAK DAKECVQECV SEFISFITSE ASERCHQEKR  60
   61 KTINGEDILF AMSTLGFDSY VEPLKLYLQK FRE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.0
Match:	1n1jA
Description:	Nuclear transcription factor Y subunit beta (Nf-Yb3)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.581886805340955	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: