YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|18655787, gi\|...
Organism:	Nitrosomonas europaea
Length:	308 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18655787, gi|....

Description	E-value	Query Range	Subject Range
gi\|114331245, gi... - gi\|114331245\|ref\|YP_747467.1\| cytochrome-c peroxidase [Nitrosomonas eutropha C91], gi\|114308259\|gb\|A...	404.0	[0..1]	[308..27]
CCPR_NITEU - Cytochrome c551 peroxidase OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) GN=ccp PE=1 SV=... CCPR_NITEU - Cytochrome c551 peroxidase OS=Nitrosomonas europaea GN=ccp PE=1 SV=2	404.0	[0..1]	[308..27]
gi\|82946762, gi\|... - gi\|83311921\|ref\|YP_422185.1\| cytochrome c peroxidase [Magnetospirillum magneticum AMB-1], gi\|8294676...	399.0	[0..1]	[308..23]
gi\|90104731, gi\|... - gi\|90422717\|ref\|YP_531087.1\| cytochrome-c peroxidase [Rhodopseudomonas palustris BisB18], gi\|9010473...	393.0	[0..1]	[307..24]
gi\|78166584, gi\|... - gi\|78186682\|ref\|YP_374725.1\| cytochrome-c peroxidase [Pelodictyon luteolum DSM 273], gi\|78166584\|gb\|...	392.0	[0..2]	[308..65]
gi\|82701582, gi\|... - gi\|82701582\|ref\|YP_411148.1\| cytochrome-c peroxidase [Nitrosospira multiformis ATCC 25196], gi\|82409...	388.0	[0..2]	[308..27]
gi\|78691092, gi\|... - gi\|78691092\|ref\|ZP_00855722.1\| Cytochrome-c peroxidase [Shewanella sp. MR-7], gi\|78509486\|gb\|EAP2287...	388.0	[0..1]	[307..22]
gi\|67783074, gi\|... - gi\|67919300\|ref\|ZP_00512882.1\| Cytochrome-c peroxidase [Chlorobium limicola DSM 245], gi\|67783074\|gb...	388.0	[0..1]	[307..44]
gi\|89346630, gi\|... - gi\|89901893\|ref\|YP_524364.1\| cytochrome-c peroxidase [Rhodoferax ferrireducens T118], gi\|89346630\|gb...	387.0	[0..2]	[307..23]
gi\|93357742, gi\|... - gi\|94313890\|ref\|YP_587099.1\| di-haem cytochrome c peroxidase [Ralstonia metallidurans CH34], gi\|9335...	386.0	[0..3]	[308..37]

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Predicted Domain #1

Region A:
Residues: [1-308]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ANEPIQPIKA VTPENADMAE LGKMLFFDPR LSKSGFISCN SCHNLSMGGT DNITTSIGHK  60
   61 WQQGPINAPT VLNSSMNLAQ FWDGRAKDLK EQAAGPIANP KEMASTHEIA EKVVASMPQY 120
  121 RERFKKVFGS DEVTIDRITT AIAQFEETLV TPGSKFDKWL EGDKNALNQD ELEGYNLFKG 180
  181 SGCVQCHNGP AVGGSSYQKM GVFKPYETKN PAAGRMDVTG NEADRNVFKV PTLRNIELTY 240
  241 PYFHDGGAAT LEQAVETMGR IQLNREFNKD EVSKIVAFLK TLTGDQPDFK LPILPPSNND 300
  301 TPRSQPYE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	113.0
Match:	1iqcA
Description:	Di-heme cytochrome c peroxidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
electron carrier activity	0.249030304384149	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: